gnu: r-gqtlstats: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-gqtlstats): Move from here... * gnu/packages/bioconductor.scm (r-gqtlstats): ...to here.master
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@ -9308,6 +9308,53 @@ metadata and outputs of the ChromImpute procedure applied to ENCODE cell lines
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by Ernst and Kellis.")
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by Ernst and Kellis.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-gqtlbase
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(package
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(name "r-gqtlbase")
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(version "1.21.1")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "gQTLBase" version))
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(sha256
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(base32
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"0nipibm1bk9k70ajbw1f6vjmz0dh7gk21l17q3m54bnawxsggrfh"))))
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(properties `((upstream-name . "gQTLBase")))
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(build-system r-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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;; This is an upstream bug.
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(add-after 'unpack 'fix-imports
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(lambda _
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(substitute* "NAMESPACE"
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((".*maxffmode.*") "")
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(("importFrom\\(ff,.*") "import(ff)\n"))
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#t)))))
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(propagated-inputs
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`(("r-batchjobs" ,r-batchjobs)
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("r-bbmisc" ,r-bbmisc)
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("r-biocgenerics" ,r-biocgenerics)
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("r-bit" ,r-bit)
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("r-doparallel" ,r-doparallel)
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("r-ff" ,r-ff)
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("r-ffbase" ,r-ffbase)
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("r-foreach" ,r-foreach)
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("r-genomicfiles" ,r-genomicfiles)
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("r-genomicranges" ,r-genomicranges)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/gQTLBase")
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(synopsis "Infrastructure for eQTL, mQTL and similar studies")
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(description
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"The purpose of this package is to simplify the storage and interrogation
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of @dfn{quantitative trait loci} (QTL) archives, such as eQTL, mQTL, dsQTL,
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and more.")
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(license license:artistic2.0)))
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(define-public r-gqtlstats
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(define-public r-gqtlstats
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(package
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(package
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(name "r-gqtlstats")
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(name "r-gqtlstats")
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@ -10549,53 +10549,6 @@ views. High-level plots include sequence fragment length, edge-linked
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interval to data view, mismatch pileup, and several splicing summaries.")
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interval to data view, mismatch pileup, and several splicing summaries.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-gqtlbase
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(package
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(name "r-gqtlbase")
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(version "1.21.1")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "gQTLBase" version))
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(sha256
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(base32
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"0nipibm1bk9k70ajbw1f6vjmz0dh7gk21l17q3m54bnawxsggrfh"))))
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(properties `((upstream-name . "gQTLBase")))
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(build-system r-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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;; This is an upstream bug.
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(add-after 'unpack 'fix-imports
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(lambda _
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(substitute* "NAMESPACE"
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((".*maxffmode.*") "")
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(("importFrom\\(ff,.*") "import(ff)\n"))
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#t)))))
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(propagated-inputs
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`(("r-batchjobs" ,r-batchjobs)
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("r-bbmisc" ,r-bbmisc)
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("r-biocgenerics" ,r-biocgenerics)
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("r-bit" ,r-bit)
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("r-doparallel" ,r-doparallel)
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("r-ff" ,r-ff)
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("r-ffbase" ,r-ffbase)
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("r-foreach" ,r-foreach)
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("r-genomicfiles" ,r-genomicfiles)
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("r-genomicranges" ,r-genomicranges)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/gQTLBase")
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(synopsis "Infrastructure for eQTL, mQTL and similar studies")
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(description
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"The purpose of this package is to simplify the storage and interrogation
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of @dfn{quantitative trait loci} (QTL) archives, such as eQTL, mQTL, dsQTL,
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and more.")
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(license license:artistic2.0)))
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(define-public r-dropbead
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(define-public r-dropbead
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(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
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(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
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(revision "2"))
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(revision "2"))
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