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@ -7203,6 +7203,55 @@ clustering analysis, differential analysis, motif inference and exploration of
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single cell ATAC-seq sequencing data.")
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(license license:gpl3)))
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(define-public r-archr
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(let ((commit "46b519ffb6f73edf132497ac31650d19ef055dc1")
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(revision "1"))
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(package
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(name "r-archr")
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(version (git-version "1.0.0" revision commit))
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/GreenleafLab/ArchR")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1zj3sdfhgn2q2256fmz61a92vw1wylyck632d7842d6knd0v92v8"))))
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(properties `((upstream-name . "ArchR")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-biostrings" ,r-biostrings)
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("r-chromvar" ,r-chromvar)
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("r-complexheatmap" ,r-complexheatmap)
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("r-data-table" ,r-data-table)
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("r-genomicranges" ,r-genomicranges)
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("r-ggplot2" ,r-ggplot2)
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("r-ggrepel" ,r-ggrepel)
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("r-gridextra" ,r-gridextra)
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("r-gtable" ,r-gtable)
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("r-gtools" ,r-gtools)
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("r-magrittr" ,r-magrittr)
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("r-matrix" ,r-matrix)
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("r-matrixstats" ,r-matrixstats)
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("r-motifmatchr" ,r-motifmatchr)
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("r-nabor" ,r-nabor)
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("r-plyr" ,r-plyr)
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("r-rcpp" ,r-rcpp)
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("r-rhdf5" ,r-rhdf5)
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("r-rsamtools" ,r-rsamtools)
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("r-s4vectors" ,r-s4vectors)
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("r-stringr" ,r-stringr)
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("r-summarizedexperiment" ,r-summarizedexperiment)
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("r-uwot" ,r-uwot)))
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(home-page "https://github.com/GreenleafLab/ArchR")
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(synopsis "Analyze single-cell regulatory chromatin in R")
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(description
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"This package is designed to streamline scATAC analyses in R.")
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(license license:gpl2+))))
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(define-public r-scde
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(package
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(name "r-scde")
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