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gnu: Add r-archr.

* gnu/packages/bioinformatics.scm (r-archr): New variable.
master
Ricardo Wurmus 2021-02-18 16:09:40 +01:00
parent 19e8417689
commit 8360705948
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1 changed files with 49 additions and 0 deletions

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@ -7203,6 +7203,55 @@ clustering analysis, differential analysis, motif inference and exploration of
single cell ATAC-seq sequencing data.")
(license license:gpl3)))
(define-public r-archr
(let ((commit "46b519ffb6f73edf132497ac31650d19ef055dc1")
(revision "1"))
(package
(name "r-archr")
(version (git-version "1.0.0" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/GreenleafLab/ArchR")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"1zj3sdfhgn2q2256fmz61a92vw1wylyck632d7842d6knd0v92v8"))))
(properties `((upstream-name . "ArchR")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-chromvar" ,r-chromvar)
("r-complexheatmap" ,r-complexheatmap)
("r-data-table" ,r-data-table)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-ggrepel" ,r-ggrepel)
("r-gridextra" ,r-gridextra)
("r-gtable" ,r-gtable)
("r-gtools" ,r-gtools)
("r-magrittr" ,r-magrittr)
("r-matrix" ,r-matrix)
("r-matrixstats" ,r-matrixstats)
("r-motifmatchr" ,r-motifmatchr)
("r-nabor" ,r-nabor)
("r-plyr" ,r-plyr)
("r-rcpp" ,r-rcpp)
("r-rhdf5" ,r-rhdf5)
("r-rsamtools" ,r-rsamtools)
("r-s4vectors" ,r-s4vectors)
("r-stringr" ,r-stringr)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-uwot" ,r-uwot)))
(home-page "https://github.com/GreenleafLab/ArchR")
(synopsis "Analyze single-cell regulatory chromatin in R")
(description
"This package is designed to streamline scATAC analyses in R.")
(license license:gpl2+))))
(define-public r-scde
(package
(name "r-scde")