From 851770312fc3aed467494112174205388c49afc2 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= Date: Tue, 26 Apr 2022 17:24:55 +0200 Subject: [PATCH] gnu: Add r-affixcan. * gnu/packages/bioconductor.scm (r-affixcan): New variable. Signed-off-by: Ricardo Wurmus --- gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 6b718b7e10..bbbe649320 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1741,6 +1741,34 @@ annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.") (license license:gpl2+))) +(define-public r-affixcan + (package + (name "r-affixcan") + (version "1.12.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AffiXcan" version)) + (sha256 + (base32 + "06yn87briv2141jqad934gg5rcd90w5nghrgmbhqnmwafn72gj9d")))) + (properties `((upstream-name . "AffiXcan"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocparallel + r-crayon + r-multiassayexperiment + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/AffiXcan") + (synopsis "Functional approach to impute genetically regulated expression") + (description + "The @code{AffiXcan} package imputes a @dfn{genetically regulated +expression} (GReX) for a set of genes in a sample of individuals, using a +method based on the @dfn{total binding affinity} (TBA). Statistical models to +impute GReX can be trained with a training dataset where the real total +expression values are known.") + (license license:gpl3))) + (define-public r-aneufinder (package (name "r-aneufinder")