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gnu: smithwaterman: Fix cross-compiling. 

* gnu/packages/bioinformatics.scm (smithwaterman)[arguments]: Add
make-flag to use cxx-for-target. Adjust custom 'patch-source and
'build-dynamic phases to use cross toolchain binaries when cross
compiling. Remove trailing #t from phases.
master
Efraim Flashner 2022-04-04 22:41:54 +03:00
parent 9bd4ed3dde
commit 855c8d9d41
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GPG Key ID: 41AAE7DCCA3D8351
1 changed files with 9 additions and 5 deletions
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14
gnu/packages/bioinformatics.scm
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@ -14182,7 +14182,8 @@ some of the details of opening and jumping in tabix-indexed files.")
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; There are no tests to run.
#:make-flags '("libsw.a" "all")
#:make-flags (list (string-append "CXX=" ,(cxx-for-target))
"libsw.a" "all")
#:phases
(modify-phases %standard-phases
(delete 'configure) ; There is no configure phase.
@ -14190,10 +14191,14 @@ some of the details of opening and jumping in tabix-indexed files.")
(lambda _
(substitute* "Makefile"
(("-c ") "-c -fPIC "))
#t))
,@(if (%current-target-system)
`((substitute* "Makefile"
(("ld") (string-append ,(%current-target-system) "-ld"))
(("ar") (string-append ,(%current-target-system) "-ar"))))
'())))
(add-after 'build 'build-dynamic
(lambda _
(invoke "g++"
(invoke ,(cxx-for-target)
"-shared" "-o" "libsmithwaterman.so"
"smithwaterman.o" "SmithWatermanGotoh.o"
"disorder.o" "BandedSmithWaterman.o"
@ -14224,8 +14229,7 @@ some of the details of opening and jumping in tabix-indexed files.")
Description: smith-waterman-gotoh alignment algorithm~@
Libs: -L${libdir} -lsmithwaterman~@
Cflags: -I${includedir}~%"
out ,version))))
#t)))))
out ,version)))))))))
(home-page "https://github.com/ekg/smithwaterman")
(synopsis "Implementation of the Smith-Waterman algorithm")
(description "Implementation of the Smith-Waterman algorithm.")