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gnu: python-scanpy: Update to 1.4.5.1. 

* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.5.1.
[source]: Fetch from pypi.
[propagated-inputs]: Add python-legacy-api-wrap, python-packaging,
python-patsy, and python-umap-learn.
[native-inputs]: Add python-setuptools-scm.
master
Ricardo Wurmus 2020-03-06 09:14:30 +01:00
parent 053ab825be
commit 858e642e4c
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GPG Key ID: 197A5888235FACAC
1 changed files with 11 additions and 10 deletions
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gnu/packages/bioinformatics.scm
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@ -13238,18 +13238,14 @@ in RNA-seq data.")
(define-public python-scanpy
(package
(name "python-scanpy")
(version "1.4")
;; Fetch from git because the pypi tarball does not include tests.
(version "1.4.5.1")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/theislab/scanpy.git")
(commit version)))
(file-name (git-file-name name version))
(method url-fetch)
(uri (pypi-uri "scanpy" version))
(sha256
(base32
"0zn6x6c0cnm1a20i6isigwb51g3pr9zpjk8r1minjqnxi5yc9pm4"))))
"14kh1ji70xxhmri5q8sgcibsidhr6f221wxrcw8a5xvibj5da17j"))))
(build-system python-build-system)
(arguments
`(#:phases
@ -13276,18 +13272,23 @@ in RNA-seq data.")
("python-igraph" ,python-igraph)
("python-joblib" ,python-joblib)
("python-louvain" ,python-louvain)
("python-legacy-api-wrap" ,python-legacy-api-wrap)
("python-matplotlib" ,python-matplotlib)
("python-natsort" ,python-natsort)
("python-networkx" ,python-networkx)
("python-numba" ,python-numba)
("python-packaging" ,python-packaging)
("python-pandas" ,python-pandas)
("python-patsy" ,python-patsy)
("python-scikit-learn" ,python-scikit-learn)
("python-scipy" ,python-scipy)
("python-seaborn" ,python-seaborn)
("python-statsmodels" ,python-statsmodels)
("python-tables" ,python-tables)))
("python-tables" ,python-tables)
("python-umap-learn" ,python-umap-learn)))
(native-inputs
`(("python-pytest" ,python-pytest)))
`(("python-pytest" ,python-pytest)
("python-setuptools-scm" ,python-setuptools-scm)))
(home-page "https://github.com/theislab/scanpy")
(synopsis "Single-Cell Analysis in Python.")
(description "Scanpy is a scalable toolkit for analyzing single-cell gene