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gnu: Add r-dexseq.

* gnu/packages/bioinformatics.scm (r-dexseq): New variable.
master
Ricardo Wurmus 2017-08-09 19:40:22 +02:00 committed by Ricardo Wurmus
parent 233f4f43bf
commit 86763fdd70
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@ -5791,6 +5791,49 @@ differential expression based on a model using the negative binomial
distribution.")
(license license:lgpl3+)))
(define-public r-dexseq
(package
(name "r-dexseq")
(version "1.22.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DEXSeq" version))
(sha256
(base32
"085aqk1wlzzqcqcqhvz74y099kr2ln5dwdxd3rl6zan806mgwahg"))))
(properties `((upstream-name . "DEXSeq")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-biomart" ,r-biomart)
("r-deseq2" ,r-deseq2)
("r-genefilter" ,r-genefilter)
("r-geneplotter" ,r-geneplotter)
("r-genomicranges" ,r-genomicranges)
("r-hwriter" ,r-hwriter)
("r-iranges" ,r-iranges)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rsamtools" ,r-rsamtools)
("r-s4vectors" ,r-s4vectors)
("r-statmod" ,r-statmod)
("r-stringr" ,r-stringr)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(home-page "http://bioconductor.org/packages/DEXSeq")
(synopsis "Inference of differential exon usage in RNA-Seq")
(description
"This package is focused on finding differential exon usage using RNA-seq
exon counts between samples with different experimental designs. It provides
functions that allows the user to make the necessary statistical tests based
on a model that uses the negative binomial distribution to estimate the
variance between biological replicates and generalized linear models for
testing. The package also provides functions for the visualization and
exploration of the results.")
(license license:gpl3+)))
(define-public r-annotationforge
(package
(name "r-annotationforge")