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gnu: r-mzr: Update to 2.26.0.

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* gnu/packages/bioconductor.scm (r-mzr): Update to 2.26.0.
[arguments]: Remove obsolute substitution.
This commit is contained in:
Ricardo Wurmus 2021-06-05 01:39:56 +02:00
parent 5d13aab6ca
commit 87d06a725f
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GPG key ID: 197A5888235FACAC
1 changed files with 3 additions and 7 deletions
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gnu/packages/bioconductor.scm
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@ -3563,14 +3563,14 @@ specific parser.")
(define-public r-mzr (define-public r-mzr
(package (package
(name "r-mzr") (name "r-mzr")
(version "2.24.1") (version "2.26.0")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
(uri (bioconductor-uri "mzR" version)) (uri (bioconductor-uri "mzR" version))
(sha256 (sha256
(base32 (base32
"0ik0yrjhvk8r5pm990chn2aadp0gqzzkkm0027682ky34xp142sg")) "1m5xvnv0rxyrfri4jwyyryr13d55nyhqvfc5xxg5mpskw2v029kp"))
(modules '((guix build utils))) (modules '((guix build utils)))
(snippet (snippet
'(begin '(begin
@ -3585,10 +3585,6 @@ specific parser.")
(lambda _ (lambda _
(substitute* "src/Makevars" (substitute* "src/Makevars"
(("\\./boost/libs.*") "") (("\\./boost/libs.*") "")
;; This is to avoid having a plain directory on the list of
;; libraries to link.
(("\\(RHDF5_LIBS\\)" match)
(string-append match "/libhdf5.a"))
(("PKG_LIBS=") "PKG_LIBS=$(BOOST_LIBS) ") (("PKG_LIBS=") "PKG_LIBS=$(BOOST_LIBS) ")
(("\\ARCH_OBJS=" line) (("\\ARCH_OBJS=" line)
(string-append line (string-append line
@ -3597,7 +3593,7 @@ specific parser.")
#t))))) #t)))))
(inputs (inputs
`(;; Our default boost package won't work here, unfortunately, even with `(;; Our default boost package won't work here, unfortunately, even with
;; mzR version 2.24.1. ;; mzR version 2.26.0.
("boost" ,boost-for-mysql) ; use this instead of the bundled boost sources ("boost" ,boost-for-mysql) ; use this instead of the bundled boost sources
("zlib" ,zlib))) ("zlib" ,zlib)))
(propagated-inputs (propagated-inputs