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gnu: Add python-ont-fast5-api.

* gnu/packages/bioinformatics.scm (python-ont-fast5-api): New variable.
master
Ricardo Wurmus 2019-07-15 12:13:42 +02:00 committed by Ricardo Wurmus
parent d71d85cd17
commit 886986b744
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1 changed files with 29 additions and 0 deletions

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@ -14754,6 +14754,35 @@ vast-tools, an RNA-Seq pipeline for alternative splicing analysis. The plots
are generated using @code{ggplot2}.") are generated using @code{ggplot2}.")
(license license:expat))) (license license:expat)))
(define-public python-ont-fast5-api
(package
(name "python-ont-fast5-api")
(version "1.4.4")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/nanoporetech/ont_fast5_api.git")
(commit (string-append "release_" version))))
(file-name (git-file-name name version))
(sha256
(base32
"03cbq4zbbwhll8ml2m9k8sa31mirsvcbjkrq1yna0kkzz9fad5fm"))))
(build-system python-build-system)
(propagated-inputs
`(("python-numpy" ,python-numpy)
("python-six" ,python-six)
("python-h5py" ,python-h5py)
("python-progressbar33" ,python-progressbar33)))
(home-page "https://github.com/nanoporetech/ont_fast5_api")
(synopsis "Interface to HDF5 files of the Oxford Nanopore fast5 file format")
(description
"This package provides a concrete implementation of the fast5 file schema
using the generic @code{h5py} library, plain-named methods to interact with
and reflect the fast5 file schema, and tools to convert between
@code{multi_read} and @code{single_read} formats.")
(license license:mpl2.0)))
(define-public tbsp (define-public tbsp
(let ((commit "ec8fff4410cfb13a677dbbb95cbbc60217e64907") (let ((commit "ec8fff4410cfb13a677dbbb95cbbc60217e64907")
(revision "1")) (revision "1"))