gnu: Add r-diffcyt.
* gnu/packages/bioconductor.scm (r-diffcyt): New variable.
parent
69af58e9a1
commit
8a0713aef2
|
@ -3004,6 +3004,44 @@ testing. The package also provides functions for the visualization and
|
||||||
exploration of the results.")
|
exploration of the results.")
|
||||||
(license license:gpl3+)))
|
(license license:gpl3+)))
|
||||||
|
|
||||||
|
(define-public r-diffcyt
|
||||||
|
(package
|
||||||
|
(name "r-diffcyt")
|
||||||
|
(version "1.14.0")
|
||||||
|
(source
|
||||||
|
(origin
|
||||||
|
(method url-fetch)
|
||||||
|
(uri (bioconductor-uri "diffcyt" version))
|
||||||
|
(sha256
|
||||||
|
(base32 "1yc9mlc0ifb7h6rzskq97bsdq1kwdp5qq9l9mciwyxf6yjkmv5ni"))))
|
||||||
|
(properties `((upstream-name . "diffcyt")))
|
||||||
|
(build-system r-build-system)
|
||||||
|
(propagated-inputs
|
||||||
|
(list r-circlize
|
||||||
|
r-complexheatmap
|
||||||
|
r-dplyr
|
||||||
|
r-edger
|
||||||
|
r-flowcore
|
||||||
|
r-flowsom
|
||||||
|
r-limma
|
||||||
|
r-lme4
|
||||||
|
r-magrittr
|
||||||
|
r-multcomp
|
||||||
|
r-reshape2
|
||||||
|
r-s4vectors
|
||||||
|
r-summarizedexperiment
|
||||||
|
r-tidyr))
|
||||||
|
(native-inputs (list r-knitr))
|
||||||
|
(home-page "https://github.com/lmweber/diffcyt")
|
||||||
|
(synopsis "Differential discovery in high-dimensional cytometry")
|
||||||
|
(description
|
||||||
|
"This package provides statistical methods for differential discovery
|
||||||
|
analyses in high-dimensional cytometry data (including flow cytometry, mass
|
||||||
|
cytometry or CyTOF, and oligonucleotide-tagged cytometry), based on a
|
||||||
|
combination of high-resolution clustering and empirical Bayes moderated tests
|
||||||
|
adapted from transcriptomics.")
|
||||||
|
(license license:expat)))
|
||||||
|
|
||||||
(define-public r-dirichletmultinomial
|
(define-public r-dirichletmultinomial
|
||||||
(package
|
(package
|
||||||
(name "r-dirichletmultinomial")
|
(name "r-dirichletmultinomial")
|
||||||
|
|
Reference in New Issue