me
/
guix
Archived
1
0
Fork 0

gnu: Add python-iced.

* gnu/packages/bioinformatics.scm (python-iced): New variable.
master
Ricardo Wurmus 2021-06-21 13:02:39 +02:00
parent 38d829cf24
commit 8a62d8685a
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 24 additions and 0 deletions

View File

@ -11957,6 +11957,30 @@ options), bedgraph, links (represented as arcs), and Hi-C matrices.
pyGenomeTracks can make plots with or without Hi-C data.")
(license license:gpl3+)))
(define-public python-iced
(package
(name "python-iced")
(version "0.5.8")
(source
(origin
(method url-fetch)
(uri (pypi-uri "iced" version))
(sha256
(base32
"1avcjmpyyvhgbj5qca4l70ipiz7j3xmcw9p6rd9c06j99faa0r71"))))
(build-system python-build-system)
(arguments `(#:tests? #false)) ; there are none
(propagated-inputs
`(("python-numpy" ,python-numpy)
("python-pandas" ,python-pandas)
("python-scipy" ,python-scipy)
("python-scikit-learn" ,python-scikit-learn)))
(home-page "https://github.com/hiclib/iced")
(synopsis "ICE normalization")
(description "This is a package for normalizing Hi-C contact counts
efficiently.")
(license license:bsd-3)))
(define-public python-hic2cool
(package
(name "python-hic2cool")