gnu: Add python-iced.
* gnu/packages/bioinformatics.scm (python-iced): New variable.
This commit is contained in:
		
							parent
							
								
									38d829cf24
								
							
						
					
					
						commit
						8a62d8685a
					
				
					 1 changed files with 24 additions and 0 deletions
				
			
		|  | @ -11957,6 +11957,30 @@ options), bedgraph, links (represented as arcs), and Hi-C matrices. | |||
| pyGenomeTracks can make plots with or without Hi-C data.") | ||||
|     (license license:gpl3+))) | ||||
| 
 | ||||
| (define-public python-iced | ||||
|   (package | ||||
|     (name "python-iced") | ||||
|     (version "0.5.8") | ||||
|     (source | ||||
|      (origin | ||||
|        (method url-fetch) | ||||
|        (uri (pypi-uri "iced" version)) | ||||
|        (sha256 | ||||
|         (base32 | ||||
|          "1avcjmpyyvhgbj5qca4l70ipiz7j3xmcw9p6rd9c06j99faa0r71")))) | ||||
|     (build-system python-build-system) | ||||
|     (arguments `(#:tests? #false)) ; there are none | ||||
|     (propagated-inputs | ||||
|      `(("python-numpy" ,python-numpy) | ||||
|        ("python-pandas" ,python-pandas) | ||||
|        ("python-scipy" ,python-scipy) | ||||
|        ("python-scikit-learn" ,python-scikit-learn))) | ||||
|     (home-page "https://github.com/hiclib/iced") | ||||
|     (synopsis "ICE normalization") | ||||
|     (description "This is a package for normalizing Hi-C contact counts | ||||
| efficiently.") | ||||
|     (license license:bsd-3))) | ||||
| 
 | ||||
| (define-public python-hic2cool | ||||
|   (package | ||||
|     (name "python-hic2cool") | ||||
|  |  | |||
		Reference in a new issue