gnu: Add python-iced.
* gnu/packages/bioinformatics.scm (python-iced): New variable.master
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@ -11957,6 +11957,30 @@ options), bedgraph, links (represented as arcs), and Hi-C matrices.
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pyGenomeTracks can make plots with or without Hi-C data.")
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pyGenomeTracks can make plots with or without Hi-C data.")
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(license license:gpl3+)))
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(license license:gpl3+)))
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(define-public python-iced
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(package
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(name "python-iced")
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(version "0.5.8")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "iced" version))
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(sha256
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(base32
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"1avcjmpyyvhgbj5qca4l70ipiz7j3xmcw9p6rd9c06j99faa0r71"))))
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(build-system python-build-system)
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(arguments `(#:tests? #false)) ; there are none
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(propagated-inputs
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`(("python-numpy" ,python-numpy)
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("python-pandas" ,python-pandas)
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("python-scipy" ,python-scipy)
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("python-scikit-learn" ,python-scikit-learn)))
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(home-page "https://github.com/hiclib/iced")
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(synopsis "ICE normalization")
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(description "This is a package for normalizing Hi-C contact counts
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efficiently.")
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(license license:bsd-3)))
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(define-public python-hic2cool
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(define-public python-hic2cool
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(package
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(package
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(name "python-hic2cool")
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(name "python-hic2cool")
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