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gnu: Add bpp-phyl.

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* gnu/packages/bioinformatics.scm (bpp-phyl): New variable.
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Ben Woodcroft 2016-07-12 16:00:36 +10:00
parent 70f1bc051a
commit 8b5f4d5700
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gnu/packages/bioinformatics.scm
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@ -555,6 +555,43 @@ Bio++ intends to help programmers to write computer expensive programs, by
providing them a set of re-usable tools.")
(license license:cecill-c))))
(define-public bpp-phyl
;; The last release was in 2014 and the recommended way to install from source
;; is to clone the git repository, so we do this.
;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
(let ((commit "0c07167b629f68b569bf274d1ad0c4af83276ae2"))
(package
(name "bpp-phyl")
(version (string-append "2.2.0-1." (string-take commit 7)))
(source (origin
(method git-fetch)
(uri (git-reference
(url "http://biopp.univ-montp2.fr/git/bpp-phyl")
(commit commit)))
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
"1ssjgchzwj3iai26kyly7gwkdv8sk59nqhkb1wpap3sf5m6kyllh"))))
(build-system cmake-build-system)
(arguments
`(#:parallel-build? #f
;; If out-of-source, test data is not copied into the build directory
;; so the tests fail.
#:out-of-source? #f))
(inputs
`(("bpp-core" ,bpp-core)
("bpp-seq" ,bpp-seq)
;; GCC 4.8 fails due to an 'internal compiler error', so we use a more
;; modern GCC.
("gcc" ,gcc-5)))
(home-page "http://biopp.univ-montp2.fr")
(synopsis "Bio++ phylogenetic Library")
(description
"Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics. This
library provides phylogenetics-related modules.")
(license license:cecill-c))))
(define-public bpp-seq
;; The last release was in 2014 and the recommended way to install from source
;; is to clone the git repository, so we do this.