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Merge branch 'master' into core-updates

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Mark H Weaver 2016-11-06 03:29:06 -05:00
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1
build-aux/run-system-tests.scm
View file

@ -69,6 +69,7 @@
(mbegin %store-monad
(show-what-to-build* drv)
(set-build-options* #:keep-going? #t #:keep-failed? #t
#:print-build-trace #t
#:fallback? #t)
(built-derivations* drv)
(mlet %store-monad ((valid (filterm (store-lift valid-path?)

9
gnu/local.mk
View file

@ -7,6 +7,7 @@
# Copyright © 2016 Kei Kebreau <kei@openmailbox.org>
# Copyright © 2016 Rene Saavedra <rennes@openmailbox.org>
# Copyright © 2016 Adonay "adfeno" Felipe Nogueira <https://libreplanet.org/wiki/User:Adfeno> <adfeno@openmailbox.org>
# Copyright © 2016 Ricardo Wurmus <rekado@elephly.net>
#
# This file is part of GNU Guix.
#
@ -640,6 +641,8 @@ dist_patch_DATA = \
%D%/packages/patches/libdrm-symbol-check.patch \
%D%/packages/patches/libevent-dns-tests.patch \
%D%/packages/patches/libextractor-ffmpeg-3.patch \
%D%/packages/patches/libjxr-fix-function-signature.patch \
%D%/packages/patches/libjxr-fix-typos.patch \
%D%/packages/patches/liboop-mips64-deplibs-fix.patch \
%D%/packages/patches/libotr-test-auth-fix.patch \
%D%/packages/patches/liblxqt-include.patch \
@ -796,7 +799,6 @@ dist_patch_DATA = \
%D%/packages/patches/python-dendropy-exclude-failing-tests.patch \
%D%/packages/patches/python-file-double-encoding-bug.patch \
%D%/packages/patches/python-fix-tests.patch \
%D%/packages/patches/python-ipython-inputhook-ctype.patch \
%D%/packages/patches/python-parse-too-many-fields.patch \
%D%/packages/patches/python-rarfile-fix-tests.patch \
%D%/packages/patches/python2-rdflib-drop-sparqlwrapper.patch \
@ -882,12 +884,7 @@ dist_patch_DATA = \
%D%/packages/patches/vte-CVE-2012-2738-pt1.patch \
%D%/packages/patches/vte-CVE-2012-2738-pt2.patch \
%D%/packages/patches/vtk-mesa-10.patch \
%D%/packages/patches/w3m-libgc.patch \
%D%/packages/patches/w3m-force-ssl_verify_server-on.patch \
%D%/packages/patches/w3m-disable-sslv2-and-sslv3.patch \
%D%/packages/patches/w3m-disable-weak-ciphers.patch \
%D%/packages/patches/weechat-python.patch \
%D%/packages/patches/weex-vacopy.patch \
%D%/packages/patches/wicd-bitrate-none-fix.patch \
%D%/packages/patches/wicd-get-selected-profile-fix.patch \
%D%/packages/patches/wicd-urwid-1.3.patch \

24
gnu/packages/admin.scm
View file

@ -1859,14 +1859,14 @@ Kerberos and Heimdal and FAST is supported with recent MIT Kerberos.")
(define-public sunxi-tools
(package
(name "sunxi-tools")
(version "1.3")
(version "1.4.1")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/linux-sunxi/"
"sunxi-tools/archive/v" version ".tar.gz"))
(sha256
(base32 "1iazm28gws1i8sls3gxwc5p108n56ags287zmh1rpvkn2k1az81a"))
(base32 "06qd2b4dlzbmzfy4q9n8v5rkkbmgcfdbv4nkkcp4nysi10k7cpfs"))
(modules '((guix build utils)))
(snippet
;; Remove binaries contained in the tarball which are only for the
@ -1882,19 +1882,16 @@ Kerberos and Heimdal and FAST is supported with recent MIT Kerberos.")
`(#:tests? #f ; no tests exist
#:make-flags (list (string-append "PREFIX="
(assoc-ref %outputs "out"))
"TARGET_TOOLS=sunxi-pio sunxi-meminfo"
"CROSS_COMPILE=")
"CROSS_COMPILE="
"CC=gcc"
"all")
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'fix-Makefile
(lambda _
(substitute* "Makefile"
;; Upstream adds Makefile and config.h as dependencies
;; of all their tools which means $^ would pass them to gcc.
;; gcc won't know what to do with a Makefile.
(("-o [$][@] [$]\\^") "-o $@ meminfo.c"))
#t))
(delete 'configure))))
(delete 'configure)
(replace 'install
(lambda* (#:key make-flags #:allow-other-keys)
(zero? (apply system* "make" "install-all" "install-misc"
make-flags)))))))
(home-page "https://github.com/linux-sunxi/sunxi-tools")
(synopsis "Hardware management tools for Allwinner computers")
(description "This package contains tools for Allwinner devices:
@ -1910,5 +1907,6 @@ bootloader) parameters.
@item @command{sunxi-pio}: Sets GPIO parameters and oscillates a GPIO
in order to be able to find it.
@item @command{sunxi-meminfo}: Prints memory bus settings.
@item @command{sunxi-nand-image-builder}: Prepares raw NAND images.
@end enumerate")
(license license:gpl2+)))

52
gnu/packages/audio.scm
View file

@ -385,6 +385,50 @@ performances. The plugins include a cellular automaton synthesizer, an
envelope follower, distortion effects, tape effects and more.")
(license license:gpl2+)))
(define-public swh-plugins-lv2
(package
(name "swh-plugins-lv2")
(version "1.0.16")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/swh/"
"lv2/archive/v" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0j1mih0lp4fds07knp5i32in515sh0df1qi6694pmyz2wqnm295w"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; no check target
#:make-flags (list "CC=gcc"
(string-append "PREFIX="
(assoc-ref %outputs "out")))
#:phases
(modify-phases %standard-phases
;; no configure script
(delete 'configure)
(add-after 'unpack 'patch-makefile-and-enter-directory
;; The default install target doesn't install, but the
;; "install-system" target does.
(lambda _
(substitute* "Makefile"
(("install:") "install: install-system"))
#t)))))
(inputs
`(("lv2" ,lv2)
("fftwf" ,fftwf)))
(native-inputs
`(("libxslt" ,libxslt)
("pkg-config" ,pkg-config)))
(home-page "http://plugin.org.uk")
(synopsis "SWH plugins in LV2 format")
(description
"Swh-plugins-lv2 is a collection of audio plugins in LV2 format. Plugin
classes include: dynamics (compressor, limiter), time (delay, chorus,
flanger), ringmodulator, distortion, filters, pitchshift, oscillators,
emulation (valve, tape), bit fiddling (decimator, pointer-cast), etc.")
(license license:gpl3+)))
(define-public csound
(package
(name "csound")
@ -1985,14 +2029,14 @@ surround and reverb.")
(define-public libxmp
(package
(name "libxmp")
(version "4.3.10")
(version "4.4.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/xmp/libxmp/" version "/"
name "-" version ".tar.gz"))
(sha256
(base32
"1gm5xa0ca7ypcbj3bkmj3k1vvzl7nkch8gjyrm8p1a9vgzr0n761"))))
"1kycz4jsyvmf7ny9227b497wc7y5ligydi6fvvldmkf8hk63ad9m"))))
(build-system gnu-build-system)
(home-page "http://xmp.sourceforge.net/")
(synopsis "Module player library")
@ -2005,14 +2049,14 @@ Scream Tracker 3 (S3M), Fast Tracker II (XM), and Impulse Tracker (IT).")
(define-public xmp
(package
(name "xmp")
(version "4.0.10")
(version "4.1.0")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/xmp/xmp/" version "/"
name "-" version ".tar.gz"))
(sha256
(base32
"0gjylvvmq7ha0nhcjg56qfp0xxpsrcsj7y5r914svd5x1ppmzm5n"))))
"17i8fc7x7yn3z1x963xp9iv108gxfakxmdgmpv3mlm438w3n3g8x"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))

6
gnu/packages/base.scm
View file

@ -1027,4 +1027,10 @@ program. It supports a wide variety of different encodings.")
(proc (module-ref iface 'canonical-package)))
(proc package)))
(define-public (%final-inputs)
"Return the list of \"final inputs\"."
;; Avoid circular dependency by lazily resolving 'commencement'.
(let ((iface (resolve-interface '(gnu packages commencement))))
(module-ref iface '%final-inputs)))
;;; base.scm ends here

20
gnu/packages/bioinformatics.scm
View file

@ -6171,13 +6171,13 @@ names in their natural, rather than lexicographic, order.")
(define-public r-edger
(package
(name "r-edger")
(version "3.16.0")
(version "3.16.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "edgeR" version))
(sha256
(base32
"1qr20j55m35dwzqyzzmla69gk5bzff8v1v2qjh7yd3362wq1ch49"))))
"1r6hhwkqp13m022hjajzr1lnjsbai0yjhykwn0kp1f0la990a808"))))
(properties `((upstream-name . "edgeR")))
(build-system r-build-system)
(propagated-inputs
@ -6235,13 +6235,13 @@ coding changes and predict coding outcomes.")
(define-public r-limma
(package
(name "r-limma")
(version "3.30.0")
(version "3.30.2")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "limma" version))
(sha256
(base32
"0d8wp7b7nymawf4czwsg27k4c61i4ij2lhv7phi6cb3hdd8c76yf"))))
"04jris7wk2lxksrrvrjsysznsdb2k04lfgrnp18ic49sazva0hfy"))))
(build-system r-build-system)
(home-page "http://bioinf.wehi.edu.au/limma")
(synopsis "Package for linear models for microarray and RNA-seq data")
@ -6398,13 +6398,13 @@ powerful online queries from gene annotation to database mining.")
(define-public r-biocparallel
(package
(name "r-biocparallel")
(version "1.8.0")
(version "1.8.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "BiocParallel" version))
(sha256
(base32
"0vz23i14f7wjygr5d4y1hp8ki6l6igwcsjscfpr6dcigmknyi55c"))))
"123i928rwi4h4sy4fpysv6pinw5nns0sm3myxi2ghqhm34ws8gyl"))))
(properties
`((upstream-name . "BiocParallel")))
(build-system r-build-system)
@ -6554,13 +6554,13 @@ alignments.")
(define-public r-rtracklayer
(package
(name "r-rtracklayer")
(version "1.34.0")
(version "1.34.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "rtracklayer" version))
(sha256
(base32
"0mix5k75j70mwplbdipqw71n8qic75ny6y8w2f5jj0pqg1k0327d"))))
"0x59k2fd0iaqi93gy6bm58p2j2z90z1b7a6w5b4c098y98n096rc"))))
(build-system r-build-system)
(arguments
`(#:phases
@ -7312,7 +7312,7 @@ paired-end data.")
(define-public r-rcas
(package
(name "r-rcas")
(version "0.99.6")
(version "1.0.0")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/BIMSBbioinfo/RCAS/archive/v"
@ -7320,7 +7320,7 @@ paired-end data.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1ljgl2b4r6w2n0i9i04d9xaphajsvhfkjdj2i2z830nha4m3w8f0"))))
"1h7di822ihgkhmmmlfbfz3c2dkjyjxl307i6mx8w0cwjqbna1kp6"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)

36
gnu/packages/cdrom.scm
View file

@ -5,6 +5,7 @@
;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org>
;;; Copyright © 2015, 2016 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Alex Kost <alezost@gmail.com>
;;; Copyright © 2016 Marius Bakke <mbakke@fastmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@ -359,3 +360,38 @@ from an audio CD.")
that grabs tracks off a CD, encodes them to Ogg/Vorbis, MP3, FLAC, Ogg/Speex
and/or MPP/MP+ (Musepack) format, and tags them, all in one go.")
(license gpl2+)))
(define-public geteltorito
(package
(name "geteltorito")
(version "0.6")
(home-page
"https://userpages.uni-koblenz.de/~krienke/ftp/noarch/geteltorito/")
(source (origin
(method url-fetch)
(uri (string-append home-page name "-" version ".tar.gz"))
(sha256
(base32
"1gkbm9ahj2mgqrkrfpibzclsriqgsbsvjh19fr815vpd9f6snkxv"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; No tests.
#:phases
(modify-phases %standard-phases
(delete 'configure)
(delete 'build)
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
(install-file "geteltorito"
(string-append out "/bin"))))))))
(inputs `(("perl" ,perl)))
(synopsis "Extract the boot image from a CD-ROM")
(description
"@command{geteltorito} can extract the initial/default boot
image from CDs (and ISOs) that follow the El Torito specification
for bootable CD-ROMs.
Image data is written to standard output by default and all other
information is written to standard error.")
(license gpl2+)))

43
gnu/packages/cross-base.scm
View file

@ -24,7 +24,6 @@
#:use-module (gnu packages)
#:use-module (gnu packages gcc)
#:use-module (gnu packages base)
#:use-module (gnu packages commencement)
#:use-module (gnu packages linux)
#:use-module (gnu packages hurd)
#:use-module (guix packages)
@ -260,11 +259,11 @@ GCC that does not target a libc; otherwise, target that libc."
;; Call it differently so that the builder can check whether the "libc"
;; input is #f.
("libc-native" ,@(assoc-ref %final-inputs "libc"))
("libc-native" ,@(assoc-ref (%final-inputs) "libc"))
;; Remaining inputs.
,@(let ((inputs (append (package-inputs %xgcc)
(alist-delete "libc" %final-inputs))))
(alist-delete "libc" (%final-inputs)))))
(if libc
`(("libc" ,libc)
("xkernel-headers" ;the target headers
@ -522,36 +521,14 @@ XBINUTILS and the cross tool chain."
,@(package-native-inputs libc))))))
;;;
;;; Concrete cross toolchains.
;;;
(define-public xgcc-mips64el
(let* ((triplet "mips64el-linux-gnuabi64") ;N64 ABI
(xgcc (cross-gcc triplet
(cross-binutils triplet)
(cross-libc triplet))))
;; Don't attempt to build this cross-compiler on i686;
;; see <http://bugs.gnu.org/19598>.
(package (inherit xgcc)
(supported-systems (fold delete
(package-supported-systems xgcc)
'("mips64el-linux" "i686-linux"))))))
(define-public xgcc-xtensa
;; Bare-bones Xtensa cross-compiler, used to build the Atheros firmware.
(cross-gcc "xtensa-elf"))
(define-public xgcc-armhf
(let* ((triplet "arm-linux-gnueabihf")
(xgcc (cross-gcc triplet
(cross-binutils triplet)
(cross-libc triplet))))
(package (inherit xgcc)
(supported-systems (delete "armhf-linux" %supported-systems)))))
;; (define-public xgcc-armel
;; (let ((triplet "armel-linux-gnueabi"))
;;; Concrete cross tool chains are instantiated like this:
;;
;; (define-public xgcc-armhf
;; (let ((triplet "arm-linux-gnueabihf"))
;; (cross-gcc triplet
;; (cross-binutils triplet)
;; (cross-libc triplet))))
;;
;;; We don't do that here because we'd be referring to bindings from (gnu
;;; packages gcc) from the top level, which doesn't play well with circular
;;; dependencies among modules.

4
gnu/packages/firmware.scm
View file

@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014, 2015 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2014, 2015, 2016 Ludovic Courtès <ludo@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
@ -71,7 +71,7 @@
;; The firmware is cross-compiled using a "bare bones" compiler (no libc.)
;; Use our own tool chain for that.
(native-inputs `(("cross-gcc" ,xgcc-xtensa)
(native-inputs `(("cross-gcc" ,(cross-gcc "xtensa-elf"))
("cross-binutils" ,(cross-binutils "xtensa-elf"))
("cmake" ,cmake)
("perl" ,perl)))

46
gnu/packages/fonts.scm
View file

@ -12,6 +12,7 @@
;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2016 Dmitry Nikolaev <cameltheman@gmail.com>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Marius Bakke <mbakke@fastmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@ -29,6 +30,7 @@
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages fonts)
#:use-module (ice-9 regex)
#:use-module (guix utils)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
@ -852,3 +854,47 @@ powerline support.")
(license (license:x11-style
"https://github.com/chrissimpkins/Hack/blob/master/LICENSE.md"
"Hack Open Font License v2.0"))))
(define-public font-adobe-source-code-pro
(package
(name "font-adobe-source-code-pro")
(version "2.030R-ro-1.050R-it")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/adobe-fonts/source-code-pro/archive/"
(regexp-substitute/global
;; The upstream tag uses "/" between the roman and italic
;; versions, so substitute our "-" separator here.
#f "R-ro-" version 'pre "R-ro/" 'post) ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0arhhsf3i7ss39ykn73d1j8k4n8vx7115xph6jwkd970p1cxvr54"))))
(build-system trivial-build-system)
(arguments
`(#:modules ((guix build utils))
#:builder
(begin
(use-modules (guix build utils))
(let ((tar (string-append (assoc-ref %build-inputs "tar")
"/bin/tar"))
(PATH (string-append (assoc-ref %build-inputs "gzip")
"/bin"))
(font-dir (string-append %output "/share/fonts/opentype")))
(setenv "PATH" PATH)
(mkdir-p font-dir)
(zero? (system* tar "-C" font-dir "--strip-components=2"
"-xvf" (assoc-ref %build-inputs "source")
(string-append "source-code-pro-"
,version "/OTF")))))))
(native-inputs
`(("gzip" ,gzip)
("tar" ,tar)))
(home-page "https://github.com/adobe-fonts/source-code-pro")
(synopsis
"Monospaced font family for user interface and coding environments")
(description
"Source Code Pro is a set of monospaced OpenType fonts that have been
designed to work well in user interface environments.")
(license license:silofl1.1)))

4
gnu/packages/freeipmi.scm
View file

@ -28,14 +28,14 @@
(define-public freeipmi
(package
(name "freeipmi")
(version "1.5.4")
(version "1.5.5")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/freeipmi/freeipmi-"
version ".tar.gz"))
(sha256
(base32
"1m8zvnyjyjap07vvc5z90nyghabbb6bjcyyc7qswj66qsmssf135"))))
"0lzzvhzbdl1cxin4xz3lirqxsjwmjr5ac0qr4g21cqsv2j6vj85f"))))
(build-system gnu-build-system)
(inputs
`(("readline" ,readline)

27
gnu/packages/ftp.scm
View file

@ -25,6 +25,8 @@
#:use-module (guix download)
#:use-module (guix packages)
#:use-module (gnu packages)
#:use-module (gnu packages autotools)
#:use-module (gnu packages gettext)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages readline)
#:use-module (gnu packages pkg-config)
@ -126,31 +128,26 @@ FTP browser, as well as non-interactive commands such as 'ncftpput' and
(define-public weex
(package
(name "weex")
(version "2.6.1.5")
(version "2.8.2")
(source
(origin
(method url-fetch)
(uri
(string-append "mirror://sourceforge/weex/weex/" version
"/weex-" version ".tar.gz"))
(string-append "mirror://sourceforge/weex/weex/"
"/weex_" version ".tar.gz"))
(sha256
(base32
"0f5cj5p852wkm24mzy2sxgxyahv2p9rk4wlq21j310pi7wlhgwyl"))
(patches (search-patches "weex-vacopy.patch"))))
"1ir761hjncr1bamaqcw9j7x57xi3s9jax3223bxwbq30a0vsw1pd"))))
(build-system gnu-build-system)
(native-inputs
`(("automake" ,automake)
("autoconf" ,autoconf)
("gettext" ,gnu-gettext)))
(arguments
`(#:phases
(modify-phases %standard-phases
(replace 'configure
;; configure does not work followed by both "SHELL=..." and
;; "CONFIG_SHELL=..."; set environment variables instead
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bash (which "bash")))
(setenv "SHELL" bash)
(setenv "CONFIG_SHELL" bash)
(zero? (system* bash "./configure"
(string-append "--prefix=" out)))))))))
(add-before 'configure 'bootstrap
(lambda _ (zero? (system* "autoreconf" "-vfi")))))))
(home-page "http://weex.sourceforge.net/")
(synopsis "Non-interactive client for FTP synchronization")
(description

19
gnu/packages/games.scm
View file

@ -2518,7 +2518,7 @@ tactics.")
(define-public starfighter
(package
(name "starfighter")
(version "1.5.1.1")
(version "1.6")
(source (origin
(method url-fetch)
(uri (string-append
@ -2527,7 +2527,7 @@ tactics.")
name "-" version "-src.tar.gz"))
(sha256
(base32
"1qc0hhw9m8sy3n9fips52c7aph3w8a8pdl4n45yaasgxzbvpn9xg"))))
"1qb5nk0b3d0ia5zszmg4a3ydf4fiy39fmymb66vwkqn4djajdhzq"))))
(build-system gnu-build-system)
(arguments
'(#:tests? #f ; no check target
@ -2563,7 +2563,7 @@ in strikes against the evil corporation.")
(define-public chromium-bsu
(package
(name "chromium-bsu")
(version "0.9.15.1")
(version "0.9.16.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/" name
@ -2571,18 +2571,11 @@ in strikes against the evil corporation.")
name "-" version ".tar.gz"))
(sha256
(base32
"01c4mki0rpz6wrqbf18fj4vd7axln5v0xqm80cyksbv63g04s6w6"))))
"0jk2w5b6s6nkzri585bbz16cif2fhqcnl5l1mq3rd98r9nil3hd1"))))
(build-system gnu-build-system)
(arguments
`(#:phases (modify-phases %standard-phases
(add-after 'set-paths 'set-sdl-paths
(lambda* (#:key inputs #:allow-other-keys)
(setenv "CPATH"
(string-append (assoc-ref inputs "sdl-union")
"/include/SDL"))
#t)))))
(native-inputs `(("pkg-config" ,pkg-config)))
(inputs `(("glu" ,glu)
(inputs `(("gettext" ,gnu-gettext)
("glu" ,glu)
("quesoglc" ,quesoglc)
("sdl-union" ,(sdl-union (list sdl sdl-image sdl-mixer)))))
(home-page "http://chromium-bsu.sourceforge.net/")

4
gnu/packages/gnome.scm
View file

@ -3608,7 +3608,7 @@ work and the interface is well tested.")
(define-public epiphany
(package
(name "epiphany")
(version "3.22.0")
(version "3.22.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/" name "/"
@ -3616,7 +3616,7 @@ work and the interface is well tested.")
name "-" version ".tar.xz"))
(sha256
(base32
"09rscbmyjxzd8wlibn1fbmbwmlwnahzfl1kkcka6dhm121yd2id6"))))
"03ncqmb8n06qr88rlwa2rph833gjcwsmxaw2wf1yawadwpnn5cda"))))
(build-system glib-or-gtk-build-system)
(arguments
;; FIXME: tests run under Xvfb, but fail with:

4
gnu/packages/gnunet.scm
View file

@ -163,7 +163,7 @@ and support for SSL3 and TLS.")
(define-public gnurl
(package
(name "gnurl")
(version "7.50.3")
(version "7.51.0")
(source (origin
(method url-fetch)
(uri (let ((version-with-underscores
@ -172,7 +172,7 @@ and support for SSL3 and TLS.")
name "-" version-with-underscores ".tar.bz2")))
(sha256
(base32
"07ij9mj60kpfrmi0436k14b1d1idsj79nk4w5h3bia69arzp2cnk"))))
"1rgl4agrzghvyfz1afk1p5ryq4b9cz28lavx8ikrav6aiv9h00ig"))))
(build-system gnu-build-system)
(inputs `(("gnutls" ,gnutls)
("libidn" ,libidn)

38
gnu/packages/gstreamer.scm
View file

@ -97,7 +97,7 @@ arrays of data.")
(define-public gstreamer
(package
(name "gstreamer")
(version "1.8.2")
(version "1.10.0")
(source
(origin
(method url-fetch)
@ -106,7 +106,7 @@ arrays of data.")
version ".tar.xz"))
(sha256
(base32
"0hc3j684nx209p10ampvnkza3gna2yiryr7jyx701ciakh3vxglx"))))
"01vjsgz58n6nrmnahs4ac7v4656yc042ymffqjzqa0a8pvx7hxqy"))))
(build-system gnu-build-system)
(outputs '("out" "doc"))
(arguments
@ -145,7 +145,7 @@ This package provides the core library and elements.")
(define-public gst-plugins-base
(package
(name "gst-plugins-base")
(version "1.8.2")
(version "1.10.0")
(source
(origin
(method url-fetch)
@ -153,7 +153,7 @@ This package provides the core library and elements.")
name "-" version ".tar.xz"))
(sha256
(base32
"13fk751vvfrfhbm4ip28vxyvlsm4b4y0bc0pvf7fqp8azg40jwcx"))))
"0jp9rwv0am8qv32q3dzhdcbyygg5wjm4fg20njyhp6n6vybyzkdz"))))
(build-system gnu-build-system)
(outputs '("out" "doc"))
(propagated-inputs
@ -199,7 +199,7 @@ for the GStreamer multimedia library.")
(define-public gst-plugins-good
(package
(name "gst-plugins-good")
(version "1.8.2")
(version "1.10.0")
(source
(origin
(method url-fetch)
@ -208,7 +208,7 @@ for the GStreamer multimedia library.")
name "-" version ".tar.xz"))
(sha256
(base32
"0i1rlbbx3m6ykvcdyaidsd8wa2b7nq2qmcvbrsg00yivi88ljxcd"))))
"1qhx6x3ax1qqbvm20zhqax3dsas4yzlx7vdjnjqllqzmcfbma0vs"))))
(build-system gnu-build-system)
(inputs
`(("aalib" ,aalib)
@ -264,18 +264,18 @@ developers consider to have good quality code and correct functionality.")
(define-public gst-plugins-bad
(package
(name "gst-plugins-bad")
(version "1.6.3")
(version "1.10.0")
(source (origin
(method url-fetch)
(uri (string-append "https://gstreamer.freedesktop.org/src/"
name "/" name "-" version ".tar.xz"))
(sha256
(base32
"0q9s5da54819gwncmdi95l5qzx97l9vxk6adx4zmx73a3l82j6wp"))))
"0kqwh5r4j05f2w9m353grvypn0106hxcr52409f7rvm3w4b9sprx"))))
(outputs '("out" "doc"))
(build-system gnu-build-system)
(arguments
'(#:tests? #f ; XXX: 11 of 54 tests fail
'(#:tests? #f ; XXX: 18 of 65 tests fail
#:configure-flags
(list (string-append "--with-html-dir="
(assoc-ref %outputs "doc")
@ -329,8 +329,9 @@ developers consider to have good quality code and correct functionality.")
;("qtx11extras" ,qtx11extras)
("soundtouch" ,soundtouch)
("x265" ,x265)
("wayland" ,wayland)))
(home-page "http://gstreamer.freedesktop.org/")
;("wayland" ,wayland) ; needs wayland-protocols
))
(home-page "https://gstreamer.freedesktop.org/")
(synopsis "Plugins for the GStreamer multimedia library")
(description
"GStreamer Bad Plug-ins is a set of plug-ins whose quality aren't up to
@ -340,7 +341,7 @@ par compared to the rest.")
(define-public gst-plugins-ugly
(package
(name "gst-plugins-ugly")
(version "1.8.2")
(version "1.10.0")
(source
(origin
(method url-fetch)
@ -348,7 +349,7 @@ par compared to the rest.")
name "/" name "-" version ".tar.xz"))
(sha256
(base32
"1b58s7z430cbbaw8mgy87kslbpmj3xmm66wsr7bddhcgm6i36nww"))))
"1q2m3bl8kh9q3grshj55lb2mqby4r20qfsrffc2l7ddb0ccqvplp"))))
(build-system gnu-build-system)
(inputs
`(("gst-plugins-base" ,gst-plugins-base)
@ -379,7 +380,7 @@ distribution problems in some jurisdictions, e.g. due to patent threats.")
(define-public gst-libav
(package
(name "gst-libav")
(version "1.8.2")
(version "1.10.0")
(source (origin
(method url-fetch)
(uri (string-append
@ -387,7 +388,7 @@ distribution problems in some jurisdictions, e.g. due to patent threats.")
name "-" version ".tar.xz"))
(sha256
(base32
"0yk8pxg3xi26ndj7pliqdfphy0jmqsq4dmdzy31gbd9rgficgwxm"))))
"0nyqkggcxfrbflcf4jyj0h9l1rkbi3r5h61w4fcbp2n72522165g"))))
(build-system gnu-build-system)
(arguments
'(#:configure-flags '("--with-system-libav")
@ -397,7 +398,8 @@ distribution problems in some jurisdictions, e.g. due to patent threats.")
(lambda _
(substitute* "gst-libs/ext/libav/configure"
(("#! /bin/sh")
(string-append "#! "(which "sh")))))))))
(string-append "#! "(which "sh"))))
#t)))))
(native-inputs
`(("pkg-config" ,pkg-config)
("python" ,python)))
@ -416,7 +418,7 @@ compression formats through the use of the libav library.")
(define-public python-gst
(package
(name "python-gst")
(version "1.8.2")
(version "1.10.0")
(source (origin
(method url-fetch)
(uri (string-append
@ -424,7 +426,7 @@ compression formats through the use of the libav library.")
"gst-python-" version ".tar.xz"))
(sha256
(base32
"15sdfa6lq5pswvi09vk51cs30yf8wr2rlm9myhb4q0c2jhiial2g"))))
"0hf71m0vqnd5sdj14li935xzzmqxh606qgw744a25w3vwj9v8nfy"))))
(build-system gnu-build-system)
(arguments
;; XXX: Factorize python-sitedir with python-build-system.

8
gnu/packages/ibus.scm
View file

@ -42,7 +42,7 @@
(define-public ibus
(package
(name "ibus")
(version "1.5.11")
(version "1.5.14")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/ibus/ibus/"
@ -50,10 +50,11 @@
version "/ibus-" version ".tar.gz"))
(sha256
(base32
"1g26llizd26h9sfz4xdq8krhz19hn08pirvfbkk3g89ri8lmm6a9"))))
"0g4x02d7j5w1lfn4zvmzsq93h17lajgn9d7hlvr6pws28vz40ax4"))))
(build-system glib-or-gtk-build-system)
(arguments
`(#:tests? #f ; tests fail because there's no connection to dbus
#:configure-flags '("--disable-emoji-dict") ; cannot find emoji.json path
#:make-flags
(list "CC=gcc"
(string-append "pyoverridesdir="
@ -106,6 +107,7 @@
("gtk2" ,gtk+-2)
("gtk+" ,gtk+)
("intltool" ,intltool)
("json-glib" ,json-glib)
("libnotify" ,libnotify)
("libx11" ,libx11)
("setxkbmap" ,setxkbmap)
@ -127,7 +129,7 @@
"IBus is an input framework providing a full-featured and user-friendly
input method user interface. It comes with multilingual input support. It
may also simplify input method development.")
(home-page "http://ibus.googlecode.com/")
(home-page "https://github.com/ibus/ibus/wiki")
(license lgpl2.1+)))
(define-public ibus-libpinyin

63
gnu/packages/image.scm
View file

@ -11,6 +11,7 @@
;;; Copyright © 2016 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2016 Arun Isaac <arunisaac@systemreboot.net>
;;; Copyright © 2016 Kei Kebreau <kei@openmailbox.org>
;;;
;;; This file is part of GNU Guix.
;;;
@ -129,6 +130,62 @@ image files in PBMPLUS PPM/PGM, GIF, BMP, and Targa file formats.")
(sha256 (base32
"1cz0dy05mgxqdgjf52p54yxpyy95rgl30cnazdrfmw7hfca9n0h0"))))))
(define-public libjxr
(package
(name "libjxr")
(version "1.1")
(source (origin
;; We are using the Debian source because CodePlex does not
;; deliver an easily downloadable tarball.
(method url-fetch)
(uri (string-append "mirror://debian/pool/main/j/jxrlib/jxrlib_"
version ".orig.tar.gz"))
(sha256
(base32
"00w3f3cmjsm3fiaxq5mxskmp5rl3mki8psrf9y8s1vqbg237na67"))
(patch-flags '("-p1" "--binary"))
(patches (search-patches "libjxr-fix-function-signature.patch"
"libjxr-fix-typos.patch"))))
(build-system gnu-build-system)
(arguments '(#:make-flags '("CC=gcc")
#:tests? #f ; no check target
#:phases
(modify-phases %standard-phases
(delete 'configure) ; no configure script
;; The upstream makefile does not include an install phase.
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin"))
(lib (string-append out "/lib"))
(include (string-append out "/include/jxrlib")))
(for-each (lambda (file)
(install-file file include)
(delete-file file))
(append
'("jxrgluelib/JXRGlue.h"
"jxrgluelib/JXRMeta.h"
"jxrtestlib/JXRTest.h"
"image/sys/windowsmediaphoto.h")
(find-files "common/include" "\\.h$")))
(for-each (lambda (file)
(install-file file lib)
(delete-file file))
(find-files "." "\\.a$"))
(for-each (lambda (file)
(install-file file bin)
(delete-file file))
'("JxrDecApp" "JxrEncApp")))
#t)))))
(synopsis "Implementation of the JPEG XR standard")
(description "JPEG XR is an approved ISO/IEC International standard (its
official designation is ISO/IEC 29199-2). This library is an implementation of that standard.")
(license
(license:non-copyleft
"file://Makefile"
"See the header of the Makefile in the distribution."))
(home-page "https://jxrlib.codeplex.com/")))
(define-public jpegoptim
(package
(name "jpegoptim")
@ -791,17 +848,15 @@ convert, manipulate, filter and display a wide variety of image formats.")
(define-public jasper
(package
(name "jasper")
(version "1.900.16")
(version "1.900.19")
(source (origin
(method url-fetch)
(uri (string-append "https://www.ece.uvic.ca/~frodo/jasper"
"/software/jasper-" version ".tar.gz"))
(sha256
(base32
"0wgrz6970sf8apyld35vrxamzx46fq15l0ipkvjsjlbwfrhj57rl"))))
"0dm3k0wdny3s37zxm9s9riv46p69c14bnn532fv6cv5b6l1b0pwb"))))
(build-system gnu-build-system)
(arguments
'(#:make-flags '("CFLAGS=-std=c99"))) ; 1.900.13 added c++ style comments
(synopsis "JPEG-2000 library")
(description "The JasPer Project is an initiative to provide a reference
implementation of the codec specified in the JPEG-2000 Part-1 standard (i.e.,

25
gnu/packages/libidn.scm
View file

@ -41,8 +41,31 @@
(description
"libidn is a library implementing of the Stringprep, Punycode and IDNA
specifications. These are used to encode and decode internationalized domain
names. It includes native C, C# and Java libraries.")
names according to the IDNA2003 specifications. It includes native C, C# and
Java libraries.")
;; The C code is dual-licensed gpl2+ lgpl3+, the manual is fdl1.3+,
;; the command line tool is gpl3+.
(license (list gpl2+ gpl3+ lgpl3+ fdl1.3+))
(home-page "http://www.gnu.org/software/libidn/")))
(define-public libidn2
(package
(name "libidn2")
(version "0.11")
(source (origin
(method url-fetch)
(uri (string-append "ftp://alpha.gnu.org/gnu/libidn/libidn2-"
version ".tar.gz"))
(sha256
(base32
"1zxzhzx14q2b1xkx746pz4lawvqd8d055yy84n52ndwb4pf7nfax"))))
(build-system gnu-build-system)
(synopsis "Internationalized domain name library for IDNA2008")
(description "Libidn2 is an internationalized domain library implementing
the IDNA2008 specifications. Libidn2 is believed to be a complete IDNA2008
implementation, but has yet to be as extensively used as the original Libidn
library.")
(home-page "https://www.gnu.org/software/libidn/#libidn2")
;; The command-line tool 'idn2' is GPL3+, while the library is dual-licensed
;; GPL2+ or LGPL3+.
(license (list gpl2+ gpl3+ lgpl3+))))

5
gnu/packages/make-bootstrap.scm
View file

@ -23,7 +23,6 @@
#:use-module (guix build-system trivial)
#:use-module (guix build-system gnu)
#:use-module ((gnu packages) #:select (search-patch))
#:use-module ((gnu packages commencement) #:select (%final-inputs))
#:use-module (gnu packages base)
#:use-module (gnu packages cross-base)
#:use-module (gnu packages bash)
@ -101,14 +100,14 @@ for `sh' in $PATH, and without nscd, and with static NSS modules."
(cross-binutils target)
(cross-bootstrap-libc)))
("cross-binutils" ,(cross-binutils target))
,@%final-inputs))
,@(%final-inputs)))
`(("libc" ,(glibc-for-bootstrap))
("gcc" ,(package (inherit gcc)
(outputs '("out")) ; all in one so libgcc_s is easily found
(inputs
`(("libc",(glibc-for-bootstrap))
,@(package-inputs gcc)))))
,@(fold alist-delete %final-inputs '("libc" "gcc")))))
,@(fold alist-delete (%final-inputs) '("libc" "gcc")))))
(package-with-explicit-inputs p inputs
(current-source-location)

7
gnu/packages/maths.scm
View file

@ -1847,7 +1847,7 @@ to BMP, JPEG or PNG image formats.")
(define-public maxima
(package
(name "maxima")
(version "5.36.1")
(version "5.38.1")
(source
(origin
(method url-fetch)
@ -1855,7 +1855,7 @@ to BMP, JPEG or PNG image formats.")
version "-source/" name "-" version ".tar.gz"))
(sha256
(base32
"0x1rk659sn3cq0n5c90848ilzr1gb1wf0072fl6jhkdq00qgh2s0"))
"1p6646rvq43hk09msyp0dk50cqpkh07mf4x0bc2fqisqmcv6b1hf"))
(patches (search-patches "maxima-defsystem-mkdir.patch"))))
(build-system gnu-build-system)
(inputs
@ -1864,7 +1864,8 @@ to BMP, JPEG or PNG image formats.")
("tk" ,tk))) ;Tcl/Tk is used by 'xmaxima'
(native-inputs
`(("texinfo" ,texinfo)
("perl" ,perl)))
("perl" ,perl)
("python" ,python)))
(arguments
`(#:configure-flags
(list "--enable-gcl"

7
gnu/packages/networking.scm
View file

@ -428,7 +428,7 @@ and up to 1 Mbit/s downstream.")
(define-public whois
(package
(name "whois")
(version "5.2.12")
(version "5.2.13")
(source
(origin
(method url-fetch)
@ -436,7 +436,7 @@ and up to 1 Mbit/s downstream.")
name "_" version ".tar.xz"))
(sha256
(base32
"1wfdyqi64l5x56j259jrrlbh19b7q7i6r83a8q8rjzcqp0kl0vdj"))))
"0r3bbxpwsxssa99d8dcjnp79mw1cjwqxgmqjm1537q277jwsk0yc"))))
(build-system gnu-build-system)
;; TODO: unbundle mkpasswd binary + its po files.
(arguments
@ -449,7 +449,8 @@ and up to 1 Mbit/s downstream.")
(add-before 'build 'setenv
(lambda _
(setenv "HAVE_ICONV" "1")
(setenv "HAVE_LIBIDN" "1"))))))
(setenv "HAVE_LIBIDN" "1")
#t)))))
(inputs
`(("libidn" ,libidn)))
(native-inputs

16
gnu/packages/patches/libjxr-fix-function-signature.patch Normal file
View file

@ -0,0 +1,16 @@
Description: Fix function signature
Author: Mathieu Malaterre <malat@debian.org>
Origin: upstream, https://jxrlib.codeplex.com/SourceControl/changeset/04cf339385b8196f98025b43a366a0790deac994
Bug-Debian: http://bugs.debian.org/748590
--- jxrlib-1.1.orig/image/decode/JXRTranscode.c
+++ jxrlib-1.1/image/decode/JXRTranscode.c
@@ -47,7 +47,7 @@ EXTERN_C Void FreeCodingContextDec(CWMIm
EXTERN_C Int StrEncInit(CWMImageStrCodec *);
EXTERN_C Void StrIOEncTerm(CWMImageStrCodec *);
EXTERN_C Void FreeCodingContextEnc(CWMImageStrCodec *);
-EXTERN_C Void encodeMB(CWMImageStrCodec *, Int, Int);
+EXTERN_C Int encodeMB(CWMImageStrCodec *, Int, Int);
EXTERN_C Int writeIndexTableNull(CWMImageStrCodec *);
EXTERN_C Void writePacketHeader(BitIOInfo *, U8, U8);

29
gnu/packages/patches/libjxr-fix-typos.patch Normal file
View file

@ -0,0 +1,29 @@
Description: Fix typos and remove some warnings
Author: Mathieu Malaterre <malat@debian.org>
Index: jxrlib-1.1/jxrencoderdecoder/JxrEncApp.c
===================================================================
--- jxrlib-1.1.orig/jxrencoderdecoder/JxrEncApp.c
+++ jxrlib-1.1/jxrencoderdecoder/JxrEncApp.c
@@ -578,7 +578,7 @@ main(int argc, char* argv[])
//================================
Call(PKCreateCodecFactory(&pCodecFactory, WMP_SDK_VERSION));
- Call(pCodecFactory->CreateCodec(&IID_PKImageWmpEncode, &pEncoder));
+ Call(pCodecFactory->CreateCodec(&IID_PKImageWmpEncode, (void**)&pEncoder));
//----------------------------------------------------------------
Call(PKCreateTestFactory(&pTestFactory, WMP_SDK_VERSION));
Index: jxrlib-1.1/jxrgluelib/JXRMeta.h
===================================================================
--- jxrlib-1.1.orig/jxrgluelib/JXRMeta.h
+++ jxrlib-1.1/jxrgluelib/JXRMeta.h
@@ -34,7 +34,7 @@
#ifndef UNREFERENCED_PARAMETER
#define UNREFERENCED_PARAMETER(P) { (P) = (P); }
-#endif UNREFERENCED_PARAMETER
+#endif /*UNREFERENCED_PARAMETER*/
//================================================================
// Container

41
gnu/packages/patches/python-ipython-inputhook-ctype.patch
View file

@ -1,41 +0,0 @@
From 04c5d358c7ab74d3ddab4f7662e539393d8604c6 Mon Sep 17 00:00:00 2001
From: Lucretiel <Lucretiel@users.noreply.github.com>
Date: Wed, 13 May 2015 13:12:43 -0400
Subject: [PATCH] register now checks for missing ctypes
If ctypes is None, then no input hooks may be registered; `InputHookManager.register` skips registration of input hook classes. Also updated `__init__` to no longer skip creating the instance attributes, to prevent AttributeError exceptions at load time.
---
IPython/lib/inputhook.py | 13 +++++++------
1 file changed, 7 insertions(+), 6 deletions(-)
diff --git a/IPython/lib/inputhook.py b/IPython/lib/inputhook.py
index 4ae2cb3..6578365 100644
--- a/IPython/lib/inputhook.py
+++ b/IPython/lib/inputhook.py
@@ -107,8 +107,8 @@ class InputHookManager(object):
def __init__(self):
if ctypes is None:
warn("IPython GUI event loop requires ctypes, %gui will not be available")
- return
- self.PYFUNC = ctypes.PYFUNCTYPE(ctypes.c_int)
+ else:
+ self.PYFUNC = ctypes.PYFUNCTYPE(ctypes.c_int)
self.guihooks = {}
self.aliases = {}
self.apps = {}
@@ -197,10 +197,11 @@ def enable(self, app=None):
...
"""
def decorator(cls):
- inst = cls(self)
- self.guihooks[toolkitname] = inst
- for a in aliases:
- self.aliases[a] = toolkitname
+ if ctypes is not None:
+ inst = cls(self)
+ self.guihooks[toolkitname] = inst
+ for a in aliases:
+ self.aliases[a] = toolkitname
return cls
return decorator

24
gnu/packages/patches/w3m-disable-sslv2-and-sslv3.patch
View file

@ -1,24 +0,0 @@
Subject: Disable SSLv2 and SSLv3.
The only remaining methods are TLSv1.* (the code never distinguishes
between TLSv1.0, TLSv1.1, and TLSv1.2).
---
fm.h | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/fm.h b/fm.h
index 320906c..ddcd4fc 100644
--- a/fm.h
+++ b/fm.h
@@ -1144,7 +1144,7 @@ global int ssl_path_modified init(FALSE);
#endif /* defined(USE_SSL) &&
* defined(USE_SSL_VERIFY) */
#ifdef USE_SSL
-global char *ssl_forbid_method init(NULL);
+global char *ssl_forbid_method init("2, 3");
#endif
global int is_redisplay init(FALSE);
--
2.6.4

24
gnu/packages/patches/w3m-disable-weak-ciphers.patch
View file

@ -1,24 +0,0 @@
Subject: Disable weak ciphers
Disable RC4, "export ciphers", and all keys < 128 bits.
Bug-Ubuntu: https://bugs.launchpad.net/ubuntu/+source/w3m/+bug/1325674
---
url.c | 1 +
1 file changed, 1 insertion(+)
diff --git a/url.c b/url.c
index ed6062e..e86b1f3 100644
--- a/url.c
+++ b/url.c
@@ -326,6 +326,7 @@ openSSLHandle(int sock, char *hostname, char **p_cert)
SSL_load_error_strings();
if (!(ssl_ctx = SSL_CTX_new(SSLv23_client_method())))
goto eend;
+ SSL_CTX_set_cipher_list(ssl_ctx, "DEFAULT:!LOW:!RC4:!EXP");
option = SSL_OP_ALL;
if (ssl_forbid_method) {
if (strchr(ssl_forbid_method, '2'))
--
2.6.4

24
gnu/packages/patches/w3m-force-ssl_verify_server-on.patch
View file

@ -1,24 +0,0 @@
Subject: Force ssl_verify_server on.
By default, SSL/TLS certificates are not verified. This enables the
verification.
---
fm.h | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/fm.h b/fm.h
index 8378939..320906c 100644
--- a/fm.h
+++ b/fm.h
@@ -1135,7 +1135,7 @@ global int view_unseenobject init(TRUE);
#endif
#if defined(USE_SSL) && defined(USE_SSL_VERIFY)
-global int ssl_verify_server init(FALSE);
+global int ssl_verify_server init(TRUE);
global char *ssl_cert_file init(NULL);
global char *ssl_key_file init(NULL);
global char *ssl_ca_path init(NULL);
--
2.6.4

28
gnu/packages/patches/w3m-libgc.patch
View file

@ -1,28 +0,0 @@
This patch fixes w3m compilation with libgc > 7.2.
Reported:
https://bugs.archlinux.org/task/33397
Patch with explanation:
http://anonscm.debian.org/cgit/collab-maint/w3m.git/commit/?id=770eec8304bdbe458
---
main.c | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/main.c b/main.c
index b421943..249eb1a 100644
--- a/main.c
+++ b/main.c
@@ -833,7 +833,8 @@ main(int argc, char **argv, char **envp)
mySignal(SIGPIPE, SigPipe);
#endif
- orig_GC_warn_proc = GC_set_warn_proc(wrap_GC_warn_proc);
+ orig_GC_warn_proc = GC_get_warn_proc();
+ GC_set_warn_proc(wrap_GC_warn_proc);
err_msg = Strnew();
if (load_argc == 0) {
/* no URL specified */
--
2.6.4

13
gnu/packages/patches/weex-vacopy.patch
View file

@ -1,13 +0,0 @@
Taken from the Debian 2.8.0 package.
--- weex-2.6.1.5/src/strlib.c 2003-08-18 11:52:38.000000000 +0200
+++ weex-2.8.0/src/strlib.c 2007-12-04 14:22:02.000000000 +0100
@@ -42,6 +42,8 @@
# define G_VA_COPY(ap1, ap2) (*(ap1) = *(ap2))
# elif defined (G_VA_COPY_AS_ARRAY)
# define G_VA_COPY(ap1, ap2) g_memmove ((ap1), (ap2), sizeof (va_list))
+# elif defined (__x86_64__)
+# define G_VA_COPY(ap1, ap2) memmove ((ap1), (ap2), sizeof (va_list))
# else /* va_list is a pointer */
# define G_VA_COPY(ap1, ap2) ((ap1) = (ap2))
# endif /* va_list is a pointer */

26
gnu/packages/pdf.scm
View file

@ -9,6 +9,7 @@
;;; Coypright © 2016 Marius Bakke <mbakke@fastmail.com>
;;; Coypright © 2016 Ludovic Courtès <ludo@gnu.org>
;;; Coypright © 2016 Julien Lepiller <julien@lepiller.eu>
;;; Copyright © 2016 Arun Isaac <arunisaac@systemreboot.net>
;;;
;;; This file is part of GNU Guix.
;;;
@ -752,3 +753,28 @@ the PDF pages.")
the framebuffer.")
(license license:gpl2+)))
(define-public pdf2svg
(package
(name "pdf2svg")
(version "0.2.3")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/dawbarton/pdf2svg/archive/v"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"12pa1pajirnlrkz2il3h4l30lc2prryk1qr132jk6z9y1c3qdcag"))))
(build-system gnu-build-system)
(inputs
`(("cairo" ,cairo)
("poppler" ,poppler)))
(native-inputs
`(("pkg-config" ,pkg-config)))
(home-page "http://www.cityinthesky.co.uk/opensource/pdf2svg/")
(synopsis "PDF to SVG converter")
(description "@command{pdf2svg} is a simple command-line PDF to SVG
converter using the Poppler and Cairo libraries.")
(license license:gpl2+)))

581
gnu/packages/python.scm
View file

@ -30,6 +30,7 @@
;;; Copyright © 2016 Stefan Reichoer <stefan@xsteve.at>
;;; Copyright © 2016 Dylan Jeffers <sapientech@sapientech@openmailbox.org>
;;; Copyright © 2016 Alex Vong <alexvong1995@gmail.com>
;;; Copyright © 2016 Arun Isaac <arunisaac@systemreboot.net>
;;;
;;; This file is part of GNU Guix.
;;;
@ -80,6 +81,7 @@
#:use-module (gnu packages pcre)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages protobuf)
#:use-module (gnu packages readline)
#:use-module (gnu packages sdl)
#:use-module (gnu packages statistics)
@ -87,6 +89,7 @@
#:use-module (gnu packages texinfo)
#:use-module (gnu packages tls)
#:use-module (gnu packages version-control)
#:use-module (gnu packages video)
#:use-module (gnu packages web)
#:use-module (gnu packages base)
#:use-module (gnu packages xml)
@ -1605,6 +1608,28 @@ standard library.")
`(#:python ,python-2
#:tests? #f)))) ; no setup.py test command
(define-public python-pafy
(package
(name "python-pafy")
(version "0.5.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pafy" version))
(sha256
(base32
"1ckvrypyvb7jbqlgwdz0y337ajagjv7dgxyns326nqwypn1wpq0i"))))
(build-system python-build-system)
(propagated-inputs
;; Youtube-dl is a python package which is imported in the file
;; "backend_youtube_dl.py", therefore it needs to be propagated.
`(("youtube-dl" ,youtube-dl)))
(home-page "https://np1.github.io/pafy/")
(synopsis "Retrieve YouTube content and metadata")
(description
"@code{pafy} is a python library to retrieve YouTube content and metadata.")
(license license:lgpl3+)))
(define-public python-py
(package
(name "python-py")
@ -4535,14 +4560,14 @@ standard library.")
(define-public python-traitlets
(package
(name "python-traitlets")
(version "4.1.0")
(version "4.2.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "traitlets" version))
(sha256
(base32
"0nxgj8jxlm1kqf8cx2x7vjid05zdgbxpqhjbdl46r8njlpgkh3j4"))))
"1afy08sa5n9gnkvh3da49c16zkyv598vchv0p1hp7zzjy8895hz4"))))
(build-system python-build-system)
(arguments
`(#:phases
@ -4568,37 +4593,165 @@ without using the configuration machinery.")
(define-public python2-traitlets
(package-with-python2 python-traitlets))
(define-public python-ipython
(define-public python-jupyter-core
(package
(name "python-ipython")
(version "3.2.1")
(name "python-jupyter-core")
(version "4.2.0")
(source
(origin
(method url-fetch)
(patches (search-patches "python-ipython-inputhook-ctype.patch"))
(uri (string-append "https://pypi.python.org/packages/source/i/"
"ipython/ipython-" version ".tar.gz"))
(uri (string-append (pypi-uri "jupyter_core" version)))
(sha256
(base32 "0xwin0sa9n0cabx4cq1ibf5ldsiw5dyimibla82kicz5gbpas4y9"))))
(base32
"177d9csqldzhsh6xs1p4nf6lzvhzyg6gklqjf69lxgxyadx87v24"))))
(build-system python-build-system)
;; FIXME: not sure how to run the tests
(arguments `(#:tests? #f))
(propagated-inputs
`(("python-traitlets" ,python-traitlets)))
(home-page "http://jupyter.org/")
(synopsis "Jupyter base package")
(description
"Jupyter core is the base package on which Jupyter projects rely.")
(license license:bsd-3)))
(define-public python2-jupyter-core
(package-with-python2 python-jupyter-core))
(define-public python-jupyter-client
(package
(name "python-jupyter-client")
(version "4.4.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "jupyter_client" version))
(sha256
(base32
"1vjjrpjw7k5sh982pbjnslv7byfbfazjw9g92jvs7dz5qbx556n9"))))
(build-system python-build-system)
;; Tests fail because of missing native python kernel which I assume is
;; provided by the ipython package, which we cannot use because it would
;; cause a dependency cycle.
(arguments `(#:tests? #f))
(propagated-inputs
`(("python-pyzmq" ,python-pyzmq)
("python-traitlets" ,python-traitlets)
("python-jupyter-core" ,python-jupyter-core)))
(home-page "http://jupyter.org/")
(synopsis "Jupyter protocol implementation and client libraries")
(description
"The @code{jupyter_client} package contains the reference implementation
of the Jupyter protocol. It also provides client and kernel management APIs
for working with kernels, and the @code{jupyter kernelspec} entrypoint for
installing @code{kernelspec}s for use with Jupyter frontends.")
(license license:bsd-3)))
(define-public python2-jupyter-client
(package-with-python2 python-jupyter-client))
(define-public python-ipykernel
(package
(name "python-ipykernel")
(version "4.5.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "ipykernel" version))
(sha256
(base32 "15c2bp1x3i6s4xb7vz7742h3kmvdfdfn9n2haywm3mwgvf77jni4"))))
(build-system python-build-system)
;; The tests load a submodule of IPython. However, IPython itself depends
;; on ipykernel.
(arguments `(#:tests? #f))
(propagated-inputs
;; imported at runtime during connect
`(("python-jupyter-client" ,python-jupyter-client)))
(home-page "http://ipython.org")
(synopsis "IPython Kernel for Jupyter")
(description
"This package provides the IPython kernel for Jupyter.")
(license license:bsd-3)))
(define-public python2-ipykernel
(package-with-python2 python-ipykernel))
(define-public python-testpath
(package
(name "python-testpath")
(version "0.2")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/jupyter/testpath/archive/"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"04kh3fgvmqz6cfcw79q70qwjz7ib7lxm27cc548iy2rpr33qqf55"))))
(build-system python-build-system)
(arguments
`(#:tests? #f ; this package does not even have a setup.py
#:phases
(modify-phases %standard-phases
(delete 'install)
(replace 'build
(lambda* (#:key inputs outputs #:allow-other-keys)
(let ((dir (string-append
(assoc-ref outputs "out")
"/lib/python"
(string-take (string-take-right
(assoc-ref inputs "python") 5) 3)
"/site-packages/testpath")))
(mkdir-p dir)
(copy-recursively "testpath" dir))
#t)))))
(home-page "https://github.com/takluyver/testpath")
(synopsis "Test utilities for code working with files and commands")
(description
"Testpath is a collection of utilities for Python code working with files
and commands. It contains functions to check things on the filesystem, and
tools for mocking system commands and recording calls to those.")
(license license:expat)))
(define-public python2-testpath
(package-with-python2 python-testpath))
(define-public python-ipython
(package
(name "python-ipython")
(version "4.0.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "ipython" version ".tar.gz"))
(sha256
(base32 "1npl8g6bfsff9j938ypx0q5fyzy2l8lp0jl8skjjj2zv0z27dlig"))))
(build-system python-build-system)
(outputs '("out" "doc"))
(propagated-inputs
`(("python-pyzmq" ,python-pyzmq)
("python-terminado" ,python-terminado)))
(inputs
`(("readline" ,readline)
("which" ,which)
("python-terminado" ,python-terminado)
("python-matplotlib" ,python-matplotlib)
("python-numpy" ,python-numpy)
("python-numpydoc" ,python-numpydoc)
("python-jinja2" ,python-jinja2)
("python-mistune" ,python-mistune)
("python-pexpect" ,python-pexpect)
("python-pickleshare" ,python-pickleshare)
("python-simplegeneric" ,python-simplegeneric)
("python-jsonschema" ,python-jsonschema)
("python-pygments" ,python-pygments)
("python-requests" ,python-requests) ;; for tests
("python-nose" ,python-nose)))
("python-traitlets" ,python-traitlets)
("python-ipykernel" ,python-ipykernel)
("python-pygments" ,python-pygments)))
(inputs
`(("readline" ,readline)
("which" ,which)))
(native-inputs
`(("pkg-config" ,pkg-config)
("python-requests" ,python-requests) ;; for tests
("python-testpath" ,python-testpath)
("python-nose" ,python-nose)
("python-sphinx" ,python-sphinx)
("texlive" ,texlive)
("texinfo" ,texinfo)
@ -4617,13 +4770,13 @@ without using the configuration machinery.")
(examples (string-append doc "/examples")))
(setenv "LANG" "en_US.utf8")
(with-directory-excursion "docs"
;; FIXME: html and pdf fail to build
;; (system* "make" "html")
;; (system* "make" "pdf" "PAPER=a4")
;; FIXME: pdf fails to build
;;(system* "make" "pdf" "PAPER=a4")
(system* "make" "html")
(system* "make" "info"))
(copy-recursively "docs/man" man1)
(copy-recursively "examples" examples)
;; (copy-recursively "docs/build/html" html)
(copy-recursively "docs/build/html" html)
;; (copy-file "docs/build/latex/ipython.pdf"
;; (string-append doc "/ipython.pdf"))
(mkdir-p info)
@ -4732,6 +4885,22 @@ and written in Python.")
(define-public python2-html5lib
(package-with-python2 python-html5lib))
;; Needed for python-bleach, a dependency of python-notebook
(define-public python-html5lib-0.9
(package
(inherit python-html5lib)
(version "0.999")
(source
(origin
(method url-fetch)
(uri (pypi-uri "html5lib" version))
(sha256
(base32
"17n4zfsj6ynmbwdwviywmj8r6nzr3xvfx2zs0xhndmvm51z7z263"))))))
(define-public python2-html5lib-0.9
(package-with-python2 python-html5lib-0.9))
(define-public python-urwid
(package
(name "python-urwid")
@ -6618,6 +6787,302 @@ Debian-related files, such as:
(define-public python2-debian
(package-with-python2 python-debian))
(define-public python-nbformat
(package
(name "python-nbformat")
(version "4.1.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "nbformat" version))
(sha256
(base32
"0mq8iki3d4mnx7wy05phss7x98mds4fqydin8lcagidp1knw1xnv"))))
(build-system python-build-system)
(arguments `(#:tests? #f)) ; no test target
(propagated-inputs
`(("python-ipython-genutils" ,python-ipython-genutils)
("python-jsonschema" ,python-jsonschema)
("python-jupyter-core" ,python-jupyter-core)
("python-traitlets" ,python-traitlets)))
(native-inputs
`(("python-setuptools" ,python-setuptools)))
(home-page "http://jupyter.org")
(synopsis "Jupyter Notebook format")
(description "This package provides the reference implementation of the
Jupyter Notebook format and Python APIs for working with notebooks.")
(license license:bsd-3)))
(define-public python2-nbformat
(package-with-python2 python-nbformat))
(define-public python-bleach
(package
(name "python-bleach")
(version "1.4.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "bleach" version))
(sha256
(base32
"0jvg3jxrvnx7xmm9gj262v60ib452xlnwlb0navyp7jsvcd0d4qj"))))
(build-system python-build-system)
(propagated-inputs
`(("python-html5lib" ,python-html5lib-0.9)
("python-setuptools" ,python-setuptools)
("python-six" ,python-six)))
(native-inputs
`(("python-nose" ,python-nose)))
(home-page "http://github.com/jsocol/bleach")
(synopsis "Whitelist-based HTML-sanitizing tool")
(description "Bleach is an easy whitelist-based HTML-sanitizing tool.")
(license license:asl2.0)))
(define-public python2-bleach
(package-with-python2 python-bleach))
(define-public python-entrypoints
(package
(name "python-entrypoints")
(version "0.2.2")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/takluyver/entrypoints/archive/"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0azqlkh3j0za080lsf5crnhaxx3c93k9dpv5ihkhf5cppgw5sjz5"))))
(build-system python-build-system)
;; The package does not come with a setup.py file, so we have to generate
;; one ourselves.
(arguments
`(#:tests? #f
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'create-setup.py
(lambda _
(call-with-output-file "setup.py"
(lambda (port)
(format port "\
from setuptools import setup
setup(name='entrypoints', version='~a', py_modules=['entrypoints'])
" ,version))))))))
(home-page "https://github.com/takluyver/entrypoints")
(synopsis "Discover and load entry points from installed Python packages")
(description "Entry points are a way for Python packages to advertise
objects with some common interface. The most common examples are
@code{console_scripts} entry points, which define shell commands by
identifying a Python function to run. The @code{entrypoints} module contains
functions to find and load entry points.")
(license license:expat)))
(define-public python2-entrypoints
(package-with-python2 python-entrypoints))
(define-public python-nbconvert
(package
(name "python-nbconvert")
(version "5.0.0b1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "nbconvert" version))
(sha256
(base32
"0brclbb18l4nmd5qy3dl9wn05rjdh1fz4rmzdlfqacj12rcdvdgp"))))
(build-system python-build-system)
;; The "bdist_egg" target is disabled by default, causing the installation
;; to fail.
(arguments `(#:configure-flags (list "bdist_egg")))
(propagated-inputs
`(("python-bleach" ,python-bleach)
("python-entrypoints" ,python-entrypoints)
("python-jinja2" ,python-jinja2)
("python-jupyter-core" ,python-jupyter-core)
("python-mistune" ,python-mistune)
("python-nbformat" ,python-nbformat)
("python-pygments" ,python-pygments)
("python-setuptools" ,python-setuptools)
("python-traitlets" ,python-traitlets)))
(home-page "http://jupyter.org")
(synopsis "Converting Jupyter Notebooks")
(description "The @code{nbconvert} tool, @{jupyter nbconvert}, converts
notebooks to various other formats via Jinja templates. It allows you to
convert an @code{.ipynb} notebook file into various static formats including:
@enumerate
@item HTML
@item LaTeX
@item PDF
@item Reveal JS
@item Markdown (md)
@item ReStructured Text (rst)
@item executable script
@end enumerate\n")
(license license:bsd-3)))
(define-public python2-nbconvert
(package-with-python2 python-nbconvert))
(define-public python-notebook
(package
(name "python-notebook")
(version "4.2.3")
(source (origin
(method url-fetch)
(uri (pypi-uri "notebook" version))
(sha256
(base32
"0laq5c2f21frq6xcdckgq7raqhznbjb0qs0357g612z87wyn1a9r"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(replace 'check
(lambda _
;; HOME must be set for tests
(setenv "HOME" "/tmp")
(zero? (system* "nosetests")))))))
(propagated-inputs
`(("python-jupyter-core" ,python-jupyter-core)
("python-nbformat" ,python-nbformat)
("python-nbconvert" ,python-nbconvert)
("python-ipython" ,python-ipython)))
(native-inputs
`(("python-nose" ,python-nose)
("python-sphinx" ,python-sphinx)
("python-requests" ,python-requests)))
(home-page "http://jupyter.org/")
(synopsis "Web-based notebook environment for interactive computing")
(description
"The Jupyter HTML notebook is a web-based notebook environment for
interactive computing.")
(license license:bsd-3)))
(define-public python2-notebook
(package-with-python2 python-notebook))
(define-public python-widgetsnbextension
(package
(name "python-widgetsnbextension")
(version "1.2.6")
(source
(origin
(method url-fetch)
(uri (pypi-uri "widgetsnbextension" version))
(sha256
(base32
"0lff2mrwrgsa1mxmwx3phl9xvy0jqfpg6khbmxy53jbq56rwy666"))))
(build-system python-build-system)
(propagated-inputs
`(("python-notebook" ,python-notebook)))
(native-inputs
`(("python-nose" ,python-nose)
("python-setuptools" ,python-setuptools)))
(home-page "http://ipython.org")
(synopsis "IPython HTML widgets for Jupyter")
(description "This package provides interactive HTML widgets for Jupyter
notebooks.")
(license license:bsd-3)))
(define-public python2-widgetsnbextension
(package-with-python2 python-widgetsnbextension))
(define-public python-ipywidgets
(package
(name "python-ipywidgets")
(version "5.2.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "ipywidgets" version))
(sha256
(base32
"1lk0qrr5l9a0z7qkkn30hv5832whxwxymf1l576fmmad0n7hkxms"))))
(build-system python-build-system)
;; FIXME: it's not clear how to run the tests.
(arguments `(#:tests? #f))
(propagated-inputs
`(("python-ipykernel" ,python-ipykernel)
("python-ipython" ,python-ipython)
("python-setuptools" ,python-setuptools)
("python-traitlets" ,python-traitlets)
("python-widgetsnbextension" ,python-widgetsnbextension)))
(home-page "http://ipython.org")
(synopsis "IPython HTML widgets for Jupyter")
(description "Ipywidgets are interactive HTML widgets for Jupyter
notebooks and the IPython kernel. Notebooks come alive when interactive
widgets are used. Users gain control of their data and can visualize changes
in the data.")
(license license:bsd-3)))
(define-public python2-ipywidgets
(package-with-python2 python-ipywidgets))
(define-public python-jupyter-console
(package
(name "python-jupyter-console")
(version "5.0.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "jupyter_console" version))
(sha256
(base32
"04acmkwsi99rcg3vb54c6n492zv35s92h2ahabc0w6wj976cipvx"))))
(build-system python-build-system)
;; FIXME: it's not clear how to run the tests.
(arguments `(#:tests? #f))
(propagated-inputs
`(("python-ipykernel" ,python-ipykernel)
("python-ipython" ,python-ipython)
("python-jupyter-client" ,python-jupyter-client)
("python-prompt-toolkit" ,python-prompt-toolkit)
("python-pygments" ,python-pygments)
("python-setuptools" ,python-setuptools)))
(home-page "https://jupyter.org")
(synopsis "Jupyter terminal console")
(description "This package provides a terminal-based console frontend for
Jupyter kernels. It also allows for console-based interaction with non-Python
Jupyter kernels such as IJulia and IRKernel.")
(license license:bsd-3)))
(define-public python2-jupyter-console
(package-with-python2 python-jupyter-console))
(define-public jupyter
(package
(name "jupyter")
(version "1.0.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "jupyter" version))
(sha256
(base32
"0pwf3pminkzyzgx5kcplvvbvwrrzd3baa7lmh96f647k30rlpp6r"))))
(build-system python-build-system)
;; FIXME: it's not clear how to run the tests.
(arguments `(#:tests? #f))
(propagated-inputs
`(("python-ipykernel" ,python-ipykernel)
("python-ipywidgets" ,python-ipywidgets)
("python-jupyter-console" ,python-jupyter-console)
("python-nbconvert" ,python-nbconvert)
("python-notebook" ,python-notebook)
("python-setuptools" ,python-setuptools)))
(home-page "http://jupyter.org")
(synopsis "Web application for interactive documents")
(description
"The Jupyter Notebook is a web application that allows you to create and
share documents that contain live code, equations, visualizations and
explanatory text. Uses include: data cleaning and transformation, numerical
simulation, statistical modeling, machine learning and much more.")
(license license:bsd-3)))
(define-public python-chardet
(package
(name "python-chardet")
@ -11625,3 +12090,79 @@ PNG, JPEG, JPEG2000 and GIF files in pure Python.")
(inherit base)
(native-inputs `(("python2-setuptools" ,python2-setuptools)
,@(package-native-inputs base))))))
(define-public python-axolotl-curve25519
(package
(name "python-axolotl-curve25519")
(version "0.1")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "git://github.com/tgalal/python-axolotl-curve25519")
(commit "e4a9c4de0eae27223200579c58d1f8f6d20637e2")))
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
"0agap5q0hmvf6cwzjqc05kw53pjgf6942pcivpazksmg1vk400ra"))))
(build-system python-build-system)
(arguments
`(;; Prevent creation of the egg. This works around
;; https://debbugs.gnu.org/cgi/bugreport.cgi?bug=20765
#:configure-flags '("--root=/")))
(native-inputs
`(("python-setuptools" ,python-setuptools)))
(home-page "https://github.com/tgalal/python-axolotl-curve25519")
(synopsis "Python wrapper for curve25519 library")
(description "This is a python wrapper for the curve25519 library
with ed25519 signatures. The C code was pulled from
libaxolotl-android. At the moment this wrapper is meant for use by
python-axolotl.")
(license (list license:gpl3 ; Most files
license:bsd-3)))) ; curve/curve25519-donna.c
(define-public python2-axolotl-curve25519
(package-with-python2 python-axolotl-curve25519))
(define-public python-axolotl
(package
(name "python-axolotl")
(version "0.1.35")
(source
(origin
(method url-fetch)
(uri (string-append
"https://github.com/tgalal/python-axolotl/archive/"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32 "1z8d89p7v40p4bwywjm9h4z28fdvra79ddw06azlkrfjbl7dxmz8"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
;; Don't install tests
(add-before 'install 'remove-tests
(lambda _
(for-each delete-file-recursively
'("axolotl/tests" "build/lib/axolotl/tests"))
#t)))
;; Prevent creation of the egg. This works around
;; https://debbugs.gnu.org/cgi/bugreport.cgi?bug=20765
#:configure-flags '("--root=/")))
(native-inputs
`(("python-setuptools" ,python-setuptools)))
(propagated-inputs
`(("python-axolotl-curve25519" ,python-axolotl-curve25519)
("python-dateutil" ,python-dateutil)
("python-protobuf" ,python-protobuf)
("python-pycrypto" ,python-pycrypto)))
(home-page "https://github.com/tgalal/python-axolotl")
(synopsis "Python port of libaxolotl-android")
(description "This is a python port of libaxolotl-android. This
is a ratcheting forward secrecy protocol that works in synchronous and
asynchronous messaging environments.")
(license license:gpl3)))
(define-public python2-axolotl
(package-with-python2 python-axolotl))

127
gnu/packages/statistics.scm
View file

@ -506,13 +506,13 @@ panels or collapse high-dimensional arrays to simpler summary statistics.")
(define-public r-proto
(package
(name "r-proto")
(version "0.3-10")
(version "1.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "proto" version))
(sha256
(base32 "03mvzi529y6kjcp9bkpk7zlgpcakb3iz73hca6rpjy14pyzl3nfh"))))
(base32 "1l843p8vckjckdhgv37ngv47fga5jzy0n00pmipvp05nnaixk54j"))))
(build-system r-build-system)
(home-page "http://r-proto.googlecode.com")
(synopsis "Prototype object-based programming")
@ -694,20 +694,22 @@ aesthetic attributes.")
(define-public r-gdtools
(package
(name "r-gdtools")
(version "0.0.7")
(version "0.1.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "gdtools" version))
(sha256
(base32
"1bmnf9d677f2jy8jnb9ymjz1qzm4yrd0qp6k5qrrly06jfffyx7g"))))
"1l9d759x9s4ddz51sls8kcjps2i9kwfbc72dnagrdavh82h0al8n"))))
(build-system r-build-system)
(native-inputs
`(("r-rcpp" ,r-rcpp)
("pkg-config" ,pkg-config)))
(inputs
`(("cairo" ,cairo)))
(propagated-inputs
`(("r-withr" ,r-withr)))
(home-page "http://cran.r-project.org/web/packages/gdtools")
(synopsis "Utilities for graphical rendering")
(description
@ -1217,14 +1219,14 @@ database.")
(define-public r-acepack
(package
(name "r-acepack")
(version "1.4.0")
(version "1.4.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "acepack" version))
(sha256
(base32
"0brivhr0imf2qq1flc9qxibybg1zi5m8pxz8cjn5a8gb42bcv96n"))))
"1f98rpfjmhd92rdc3j004plyfpjailz6j0ycysbac0kgj83haxc2"))))
(build-system r-build-system)
(inputs
`(("gfortran" ,gfortran)))
@ -1646,14 +1648,14 @@ R version.")
(define-public r-checkmate
(package
(name "r-checkmate")
(version "1.8.1")
(version "1.8.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "checkmate" version))
(sha256
(base32
"1nqyi58jl33af82y8kw8iy9xbna2080y1khhy90kf6lim6q74024"))))
"1zqcggl9m7slvc0q6zyhssdypb7jzf3l9byl5vxh1qdwjiw2y64g"))))
(build-system r-build-system)
(propagated-inputs
`(("r-backports" ,r-backports)))
@ -1786,14 +1788,14 @@ collation, and NAMESPACE files.")
(define-public r-openssl
(package
(name "r-openssl")
(version "0.9.4")
(version "0.9.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "openssl" version))
(sha256
(base32
"0rpb3xdzab453yjddr8ryad53ll27zss8abnj30aqa2lzbg4jwyb"))))
"1lal8mmcwjhhln10mfi96ipv3d364k0wiviiln220wvhddcpr9pp"))))
(build-system r-build-system)
(inputs
`(("openssl" ,openssl)))
@ -2789,6 +2791,75 @@ Fourier transform, fuzzy clustering, support vector machines, shortest path
computation, bagged clustering, naive Bayes classifier, and more.")
(license license:gpl2+)))
(define-public r-bigmemory-sri
(package
(name "r-bigmemory-sri")
(version "0.1.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "bigmemory.sri" version))
(sha256
(base32 "0mg14ilwdkd64q2ri9jdwnk7mp55dqim7xfifrs65sdsv1934h2m"))))
(properties
`((upstream-name . "bigmemory.sri")))
(build-system r-build-system)
(home-page "http://cran.r-project.org/web/packages/bigmemory.sri")
(synopsis "Shared resource interface for the bigmemory package")
(description "This package provides a shared resource interface for the
bigmemory and synchronicity packages.")
;; Users can choose either LGPLv3 or ASL2.0.
(license (list license:lgpl3 license:asl2.0))))
(define-public r-synchronicity
(package
(name "r-synchronicity")
(version "1.1.9.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "synchronicity" version))
(sha256
(base32
"0d9skpwmsnkn4xb3f2kgyyv8bhdi0r9p1kj3cvi0s92fjjnpi00c"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bh" ,r-bh)
("r-bigmemory-sri" ,r-bigmemory-sri)
("r-rcpp" ,r-rcpp)))
(home-page "http://www.bigmemory.org")
(synopsis "Boost mutex functionality in R")
(description "This package provides support for synchronization
via mutexes and may eventually support interprocess communication and
message passing.")
;; Users can choose either LGPLv3 or ASL2.0.
(license (list license:lgpl3 license:asl2.0))))
(define-public r-bigmemory
(package
(name "r-bigmemory")
(version "4.5.19")
(source
(origin
(method url-fetch)
(uri (cran-uri "bigmemory" version))
(sha256
(base32
"191gbzca557kpk7mdsg716vfyqpr7j5din6qb8hin4g1nkzzwmg6"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bh" ,r-bh)
("r-rcpp" ,r-rcpp)
("r-bigmemory-sri" ,r-bigmemory-sri)
("r-r-utils" ,r-r-utils)))
(home-page "http://www.bigmemory.org")
(synopsis "Manage large matrices with shared memory or memory-mapped files")
(description "This package provides methods to create, store, access, and
manipulate large matrices. Matrices are allocated to shared memory and may use
memory-mapped files.")
;; Users can choose either LGPLv3 or ASL2.0.
(license (list license:lgpl3 license:asl2.0))))
(define-public r-nmf
(package
(name "r-nmf")
@ -2804,6 +2875,8 @@ computation, bagged clustering, naive Bayes classifier, and more.")
(build-system r-build-system)
(propagated-inputs
`(("r-cluster" ,r-cluster)
("r-bigmemory" ,r-bigmemory)
("r-synchronicity" ,r-synchronicity)
("r-colorspace" ,r-colorspace)
("r-digest" ,r-digest)
("r-doparallel" ,r-doparallel)
@ -2884,13 +2957,13 @@ want to migrate to S4.")
(define-public r-r-oo
(package
(name "r-r-oo")
(version "1.20.0")
(version "1.21.0")
(source (origin
(method url-fetch)
(uri (cran-uri "R.oo" version))
(sha256
(base32
"1l1x4r69mdchjyi6sq52p580fz3b3bqv6dpn1706y9n4vq47qx24"))))
"0723gxjazgqq7v3lwnl7axw3brzcnizvhbd71ijkkv8mz31fwp34"))))
(properties `((upstream-name . "R.oo")))
(build-system r-build-system)
(propagated-inputs
@ -3232,17 +3305,37 @@ distribution).")
classification, regression and survival trees.")
(license (list license:gpl2+ license:gpl3+))))
(define-public r-survival
(package
(name "r-survival")
(version "2.40-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "survival" version))
(sha256
(base32
"10pf0kq0g66k5rgizrvh29mq3r84acljw2jgrv5yp6z38xw23mci"))))
(build-system r-build-system)
(home-page "https://github.com/therneau/survival")
(synopsis "Survival analysis")
(description
"This package contains the core survival analysis routines, including
definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state)
curves, Cox models, and parametric accelerated failure time models.")
(license license:lgpl2.0+)))
(define-public r-hmisc
(package
(name "r-hmisc")
(version "3.17-4")
(version "4.0-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "Hmisc" version))
(sha256
(base32
"1hr2kycpm0h3li9gnlbx9pl6h13das7g2wqfk6cip1kx6lv00ypw"))))
"0azxmg9h9c456biydc0wpi9xhljmd37m8bv0zaadbvc93g7x0l4b"))))
(properties `((upstream-name . "Hmisc")))
(build-system r-build-system)
(native-inputs
@ -3257,7 +3350,13 @@ classification, regression and survival trees.")
("r-gridextra" ,r-gridextra)
("r-gtable" ,r-gtable)
("r-lattice" ,r-lattice)
;; Hmisc needs survival >= 2.40.1, so it cannot use the survival
;; package that comes with R 3.3.1.
("r-survival" ,r-survival)
("r-latticeextra" ,r-latticeextra)
("r-htmltable" ,r-htmltable)
("r-htmltools" ,r-htmltools)
("r-viridis" ,r-viridis)
("r-nnet" ,r-nnet)
("r-rpart" ,r-rpart)))
(home-page "http://biostat.mc.vanderbilt.edu/Hmisc")

29
gnu/packages/video.scm
View file

@ -11,6 +11,7 @@
;;; Copyright © 2016 Kei Kebreau <kei@openmailbox.org>
;;; Copyright © 2016 Dmitry Nikolaev <cameltheman@gmail.com>
;;; Copyright © 2016 Andy Patterson <ajpatter@uwaterloo.ca>
;;; Copyright © 2016 ng0 <ng0@we.make.ritual.n0.is>
;;;
;;; This file is part of GNU Guix.
;;;
@ -1684,3 +1685,31 @@ specifications.")
(description "libaacs is a library which implements the Advanced Access
Content System specification.")
(license license:lgpl2.1+)))
(define-public mps-youtube
(package
(name "mps-youtube")
(version "0.2.7.1")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/mps-youtube/mps-youtube/"
"archive/v" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1s7h35yx6f0szf8mm8612ic913w3v05m2kwphjfcxnpq0ammhyci"))))
(build-system python-build-system)
(propagated-inputs
`(("python-pafy" ,python-pafy)
("python-pygobject" ,python-pygobject))) ; For mpris2 support
(home-page "https://github.com/mps-youtube/mps-youtube")
(synopsis "Terminal based YouTube player and downloader")
(description
"@code{mps-youtube} is based on mps, a terminal based program to
search, stream and download music. This implementation uses YouTube as
a source of content and can play and download video as well as audio.
It can use either mpv or mplayer for playback, and for conversion of
formats ffmpeg or libav is used. Users should install one of the
supported players in addition to this package.")
(license license:gpl3+)))

33
gnu/packages/w3m.scm
View file

@ -1,6 +1,7 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org>
;;; Copyright © 2016 Leo Famulari <leo@famulari.name>
;;; Copyright © 2016 Kei Kebreau <kei@openmailbox.org>
;;;
;;; This file is part of GNU Guix.
;;;
@ -28,37 +29,29 @@
#:use-module (gnu packages tls)
#:use-module (gnu packages)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix build-system gnu))
(define-public w3m
(package
(name "w3m")
(version "0.5.3")
(version "0.5.3+git20161031")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/" name "/" name "/"
name "-" version "/"
name "-" version ".tar.gz"))
(sha256
(base32
"1qx9f0kprf92r1wxl3sacykla0g04qsi0idypzz24b7xy9ix5579"))
;; cf. https://bugs.archlinux.org/task/33397
(patches (search-patches "w3m-libgc.patch"
"w3m-force-ssl_verify_server-on.patch"
"w3m-disable-sslv2-and-sslv3.patch"
"w3m-disable-weak-ciphers.patch"))))
(method git-fetch)
;; Debian's fork of w3m is the only one that is still
;; maintained.
(uri (git-reference
(url "https://anonscm.debian.org/cgit/collab-maint/w3m.git")
(commit (string-append "v" version))))
(file-name (string-append "w3m-" version "-checkout"))
(sha256
(base32
"142vkkmsk76wj9w6r4y2pa1hmy1kkzmc73an9zchx0ikm2z92x6s"))))
(build-system gnu-build-system)
(arguments `(#:tests? #f ; no check target
#:phases (alist-cons-before
'configure 'fix-perl
(lambda _
;; https://launchpad.net/bugs/935540
;; 'struct file_handle' is used by 'glibc'
(substitute* '("istream.c" "istream.h")
(("struct[[:blank:]]+file_handle")
"struct w3m_file_handle"))
(substitute* '("scripts/w3mmail.cgi.in"
"scripts/dirlist.cgi.in")
(("@PERL@") (which "perl"))))

29
gnu/packages/web.scm
View file

@ -3310,6 +3310,35 @@ various contexts including the R console, R Markdown documents, and Shiny web
applications.")
(license l:expat)))
(define-public r-htmltable
(package
(name "r-htmltable")
(version "1.7")
(source
(origin
(method url-fetch)
(uri (cran-uri "htmlTable" version))
(sha256
(base32
"0x2f2hrbhvm53zqwn0ny9wxbk34nwf6zww8cx4bjy5ax15asdllm"))))
(properties `((upstream-name . "htmlTable")))
(build-system r-build-system)
(propagated-inputs
`(("r-knitr" ,r-knitr)
("r-magrittr" ,r-magrittr)
("r-stringr" ,r-stringr)))
(home-page "http://gforge.se/packages/")
(synopsis "Advanced tables for Markdown/HTML")
(description
"This package provides functions to build tables with advanced layout
elements such as row spanners, column spanners, table spanners, zebra
striping, and more. While allowing advanced layout, the underlying
CSS-structure is simple in order to maximize compatibility with word
processors such as LibreOffice. The package also contains a few text
formatting functions that help outputting text compatible with HTML or
LaTeX.")
(license l:gpl3+)))
(define-public r-curl
(package
(name "r-curl")

4
gnu/packages/webkit.scm
View file

@ -53,14 +53,14 @@
(define-public webkitgtk
(package
(name "webkitgtk")
(version "2.14.1")
(version "2.14.2")
(source (origin
(method url-fetch)
(uri (string-append "https://www.webkitgtk.org/releases/"
name "-" version ".tar.xz"))
(sha256
(base32
"1dffnz20psgc604azhbzn9a6cdhafar9dw74w3bbwrfy531pcb9f"))))
"0mjmcxhafh6l6j062z2nwfqbbvfyx16iqrzrbajswijh23awpnrf"))))
(build-system cmake-build-system)
(arguments
'(#:tests? #f ; no tests

8
gnu/packages/xiph.scm
View file

@ -229,8 +229,8 @@ meaning that audio is compressed in FLAC without any loss in quality.")
(version "0.4.1")
(source (origin
(method url-fetch)
(uri (string-append "http://libkate.googlecode.com/files/libkate-"
version ".tar.gz"))
(uri (string-append "http://downloads.xiph.org/releases/kate/"
"libkate-" version ".tar.gz"))
(sha256
(base32
"0s3vr2nxfxlf1k75iqpp4l78yf4gil3f0v778kvlngbchvaq23n4"))))
@ -241,7 +241,7 @@ meaning that audio is compressed in FLAC without any loss in quality.")
(inputs `(("bison" ,bison)
("libogg" ,libogg)
("libpng" ,libpng)
("python" ,python-wrapper)
("python" ,python-wrapper)
("zlib" ,zlib)))
(synopsis "Karaoke and text codec for embedding in ogg")
(description
@ -257,7 +257,7 @@ This allows scrolling or fading text to be defined. This can even be used
to draw arbitrary shapes, so hand drawing can also be represented by a
Kate stream.")
(license license:bsd-3)
(home-page "http://code.google.com/p/libkate/")))
(home-page "https://wiki.xiph.org/OggKate")))
(define vorbis-tools
(package

2
guix/import/cran.scm
View file

@ -231,7 +231,7 @@ s-expression corresponding to that package, or #f on failure."
(start (string-rindex url #\/)))
;; The URL ends on
;; (string-append "/" name "_" version ".tar.gz")
(substring url start end)))
(substring url (+ start 1) end)))
(_ #f)))
(_ #f)))))

2930
po/guix/pt_BR.po
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