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gnu: r-delayedmatrixstats: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Move from here...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
zimoun 2020-09-14 18:07:39 +02:00 • committed by Ricardo Wurmus
parent b3a998374c
commit 8c7c6db408
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GPG key ID: 197A5888235FACAC
2 changed files with 36 additions and 36 deletions
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36
gnu/packages/bioconductor.scm
View file

@ -8346,3 +8346,39 @@ routines.")
"This package interfaces R with the graphviz library for plotting R graph
objects from the @code{graph} package.")
(license license:epl1.0)))
(define-public r-delayedmatrixstats
(package
(name "r-delayedmatrixstats")
(version "1.10.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DelayedMatrixStats" version))
(sha256
(base32
"046sam0rz42ph0m7jz7v3bck7d3h2mp45gzywh5dvc1qkjq6fdxx"))))
(properties
`((upstream-name . "DelayedMatrixStats")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocparallel" ,r-biocparallel)
("r-delayedarray" ,r-delayedarray)
("r-hdf5array" ,r-hdf5array)
("r-iranges" ,r-iranges)
("r-matrix" ,r-matrix)
("r-matrixstats" ,r-matrixstats)
("r-s4vectors" ,r-s4vectors)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/PeteHaitch/DelayedMatrixStats")
(synopsis "Functions that apply to rows and columns of DelayedMatrix objects")
(description
"This package provides a port of the @code{matrixStats} API for use with
@code{DelayedMatrix} objects from the @code{DelayedArray} package. It
contains high-performing functions operating on rows and columns of
@code{DelayedMatrix} objects, e.g. @code{colMedians}, @code{rowMedians},
@code{colRanks}, @code{rowRanks}, @code{colSds}, and @code{rowSds}. Functions
are optimized per data type and for subsetted calculations such that both
memory usage and processing time is minimized.")
(license license:expat)))

36
gnu/packages/bioinformatics.scm
View file

@ -10900,42 +10900,6 @@ cell-specific biases, assignment of cell cycle phase, and detection of highly
variable and significantly correlated genes.")
(license license:gpl3)))
(define-public r-delayedmatrixstats
(package
(name "r-delayedmatrixstats")
(version "1.10.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DelayedMatrixStats" version))
(sha256
(base32
"046sam0rz42ph0m7jz7v3bck7d3h2mp45gzywh5dvc1qkjq6fdxx"))))
(properties
`((upstream-name . "DelayedMatrixStats")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocparallel" ,r-biocparallel)
("r-delayedarray" ,r-delayedarray)
("r-hdf5array" ,r-hdf5array)
("r-iranges" ,r-iranges)
("r-matrix" ,r-matrix)
("r-matrixstats" ,r-matrixstats)
("r-s4vectors" ,r-s4vectors)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/PeteHaitch/DelayedMatrixStats")
(synopsis "Functions that apply to rows and columns of DelayedMatrix objects")
(description
"This package provides a port of the @code{matrixStats} API for use with
@code{DelayedMatrix} objects from the @code{DelayedArray} package. It
contains high-performing functions operating on rows and columns of
@code{DelayedMatrix} objects, e.g. @code{colMedians}, @code{rowMedians},
@code{colRanks}, @code{rowRanks}, @code{colSds}, and @code{rowSds}. Functions
are optimized per data type and for subsetted calculations such that both
memory usage and processing time is minimized.")
(license license:expat)))
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))