From 8d14b1cbb60aaae926daa82849b892f9666e8b4f Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Thu, 2 May 2024 21:39:30 +0200
Subject: [PATCH] gnu: snakemake-5: Make compatible with tabulate 0.9.0.

* gnu/packages/python-xyz.scm (snakemake-5)[arguments]: Add phase
'tabulate-compatibility.

Change-Id: I0b0ddafe9c2da91dbe10a584eb6fa0a3d5d62e87
---
 gnu/packages/python-xyz.scm | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 788148f32b..b3c6d9821e 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -13222,6 +13222,11 @@ approach.")
         "--ignore=tests/test_google_lifesciences.py")
       #:phases
       #~(modify-phases %standard-phases
+          (add-after 'unpack 'tabulate-compatibility
+            (lambda _
+              (substitute* "snakemake/dag.py"
+                (("\"job\": rule,")
+                 "\"job\": rule.name,"))))
           ;; For cluster execution Snakemake will call Python.  Since there is
           ;; no suitable PYTHONPATH set, cluster execution will fail.  We fix
           ;; this by calling the snakemake wrapper instead.