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gnu: Add r-ucsc-utils.

* gnu/packages/bioconductor.scm (r-ucsc-utils): New variable.

Change-Id: I02eebaa69a57b8bbd97b38ae7d62799971f70d45
master
Ricardo Wurmus 2024-05-07 12:31:05 +02:00
parent 61a5676a9d
commit 8d531f9afb
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1 changed files with 26 additions and 0 deletions

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@ -19979,6 +19979,32 @@ UCell can be applied to any single-cell data matrix, and includes functions to
directly interact with SingleCellExperiment and Seurat objects.")
(license license:gpl3)))
(define-public r-ucsc-utils
(package
(name "r-ucsc-utils")
(version "1.0.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "UCSC.utils" version))
(sha256
(base32 "0w9f5xd6ryniapbpcrpczn8wimph2154w45cvdgqfa3dv5qy379l"))))
(properties `((upstream-name . "UCSC.utils")))
(build-system r-build-system)
(propagated-inputs (list r-httr r-jsonlite r-s4vectors))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/UCSC.utils")
(synopsis
"Low-level utilities to retrieve data from the UCSC Genome Browser")
(description
"This package provides a set of low-level utilities to retrieve data from the
UCSC Genome Browser. Most functions in the package access the data via the UCSC
REST API but some of them query the UCSC @code{MySQL} server directly. Note
that the primary purpose of the package is to support higher-level
functionalities implemented in downstream packages like @code{GenomeInfoDb} or
txdbmaker.")
(license license:artistic2.0)))
(define-public r-unifiedwmwqpcr
(package
(name "r-unifiedwmwqpcr")