gnu: r-genomeinfodbdata: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Move from here... * gnu/packages/bioconductor.scm (r-genomeinfodbdata): ...to here. [source]: Use 'bioconductor-uri'.
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@ -3,6 +3,7 @@
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;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen <roel@gnu.org>
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;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen <roel@gnu.org>
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;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
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;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
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;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
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;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
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;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
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;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
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;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
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;;; Copyright © 2019, 2020, 2021 Simon Tournier <zimon.toutoune@gmail.com>
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;;; Copyright © 2019, 2020, 2021 Simon Tournier <zimon.toutoune@gmail.com>
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;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com>
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;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com>
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@ -391,6 +392,25 @@ musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored
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in Biostrings objects.")
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in Biostrings objects.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-genomeinfodbdata
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(package
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(name "r-genomeinfodbdata")
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(version "1.2.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "GenomeInfoDbData" version 'annotation))
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(sha256
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(base32
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"0di6nlqpsyqf693k2na65ayqldih563x3zfrczpqc5q2hl5kg35c"))))
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(properties
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`((upstream-name . "GenomeInfoDbData")))
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(build-system r-build-system)
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(home-page "https://bioconductor.org/packages/GenomeInfoDbData")
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(synopsis "Species and taxonomy ID look up tables for GenomeInfoDb")
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(description "This package contains data for mapping between NCBI taxonomy
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ID and species. It is used by functions in the GenomeInfoDb package.")
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(license license:artistic2.0)))
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(define-public r-homo-sapiens
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(define-public r-homo-sapiens
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(package
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(package
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(name "r-homo-sapiens")
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(name "r-homo-sapiens")
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@ -7691,29 +7691,6 @@ including VCF header and contents in RDF and JSON.")
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(home-page "https://github.com/vcflib/bio-vcf")
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(home-page "https://github.com/vcflib/bio-vcf")
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(license license:expat)))
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(license license:expat)))
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(define-public r-genomeinfodbdata
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(package
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(name "r-genomeinfodbdata")
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(version "1.2.0")
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(source (origin
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(method url-fetch)
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;; We cannot use bioconductor-uri here because this tarball is
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;; located under "data/annotation/" instead of "bioc/".
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(uri (string-append "https://bioconductor.org/packages/release/"
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"data/annotation/src/contrib/GenomeInfoDbData_"
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version ".tar.gz"))
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(sha256
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(base32
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"0di6nlqpsyqf693k2na65ayqldih563x3zfrczpqc5q2hl5kg35c"))))
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(properties
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`((upstream-name . "GenomeInfoDbData")))
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(build-system r-build-system)
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(home-page "https://bioconductor.org/packages/GenomeInfoDbData")
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(synopsis "Species and taxonomy ID look up tables for GenomeInfoDb")
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(description "This package contains data for mapping between NCBI taxonomy
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ID and species. It is used by functions in the GenomeInfoDb package.")
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(license license:artistic2.0)))
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(define-public r-genomeinfodb
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(define-public r-genomeinfodb
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(package
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(package
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(name "r-genomeinfodb")
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(name "r-genomeinfodb")
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