me/guix
Archived
1
0
Fork 0
Code Activity

gnu: Add aragorn.

Browse source 
* gnu/packages/bioinformatics.scm (aragorn): New variable.
This commit is contained in:
Ben Woodcroft 2015-07-21 16:37:23 +02:00 • committed by Ricardo Wurmus
parent 5ff0edaee6
commit 8dc797fa28
1 changed files with 48 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

48
gnu/packages/bioinformatics.scm
View file

@ -54,6 +54,54 @@
#:use-module (gnu packages xml)
#:use-module (gnu packages zip))
(define-public aragorn
(package
(name "aragorn")
(version "1.2.36")
(source (origin
(method url-fetch)
(uri (string-append
"http://mbio-serv2.mbioekol.lu.se/ARAGORN/Downloads/aragorn"
version ".tgz"))
(sha256
(base32
"1dg7jlz1qpqy88igjxd6ncs11ccsirb36qv1z01a0np4i4jh61mb"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; there are no tests
#:phases
(modify-phases %standard-phases
(delete 'configure)
(replace 'build
(lambda _
(zero? (system* "gcc"
"-O3"
"-ffast-math"
"-finline-functions"
"-o"
"aragorn"
(string-append "aragorn" ,version ".c")))))
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin"))
(man (string-append out "/share/man/man1")))
(mkdir-p bin)
(copy-file "aragorn"
(string-append bin "/aragorn"))
(mkdir-p man)
(copy-file "aragorn.1"
(string-append man "/aragorn.1")))
#t)))))
(home-page "http://mbio-serv2.mbioekol.lu.se/ARAGORN")
(synopsis "Detect tRNA, mtRNA and tmRNA genes in nucleotide sequences")
(description
"Aragorn identifies transfer RNA, mitochondrial RNA and
transfer-messenger RNA from nucleotide sequences, based on homology to known
tRNA consensus sequences and RNA structure. It also outputs the secondary
structure of the predicted RNA.")
(license license:gpl2)))
(define-public bamtools
(package
(name "bamtools")