gnu: conda: Update to 22.9.0.
* gnu/packages/package-management.scm (conda): Update to 22.9.0. [arguments]: Add phase "use-older-pytest"; run tests conditionally; disable broken tests; remove phase "fix-permissions". [propagated-inputs]: Add python-boto3 and python-pluggy. [native-inputs]: Add python-coverage, python-flaky, and python-pytest-xprocess.master
Ricardo Wurmus
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d26337e7ef
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8e42bfaffa
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@ -1007,7 +1007,7 @@ extracting, creating, and converting between formats.")
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(define-public conda
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(package
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(name "conda")
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(version "4.10.3")
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(version "22.9.0")
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(source
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(origin
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(method git-fetch)
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@ -1017,17 +1017,16 @@ extracting, creating, and converting between formats.")
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1w4yy62bsvkybjvcm5fspck4ns5j16nplzpbx6bxv7zhx69pcp4n"))))
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"16vz4vx311ry9w35mi5wna8p8n3abd6wdqrpqzjfdlwv7hcr44s4"))))
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(build-system python-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'fix-permissions
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;; The default version of pytest does not support these options.
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(add-after 'unpack 'use-older-pytest
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(lambda _
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;; This file is no longer writable after downloading with
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;; 'git-fetch'
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(make-file-writable
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"tests/conda_env/support/saved-env/environment.yml")))
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(substitute* "setup.cfg"
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(("--xdoctest-.*") ""))))
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(add-after 'unpack 'fix-ruamel-yaml-dependency
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(lambda _
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(substitute* "setup.py"
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@ -1071,37 +1070,44 @@ extracting, creating, and converting between formats.")
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(with-output-to-file "conda/.version"
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(lambda () (display ,version)))))
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(replace 'check
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(lambda _
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(setenv "HOME" "/tmp")
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(invoke "py.test" "-vv"
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"-k"
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(string-append
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"not integration"
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;; This one reports a newer version of conda than
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;; expected.
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" and not test_auto_update_conda"
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;; This fails because the output directory is not a
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;; Conda environment.
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" and not test_list"
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;; This fails because we patched the default root
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;; prefix.
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" and not test_default_target_is_root_prefix"
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(lambda* (#:key tests? #:allow-other-keys)
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;; These tests all require network access.
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(for-each delete-file '("tests/cli/test_main_clean.py"
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"tests/cli/test_main_rename.py"))
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(when tests?
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(setenv "HOME" "/tmp")
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(invoke "py.test" "-vv"
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"-k"
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(string-append
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"not integration"
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;; This one reports a newer version of conda than
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;; expected; conda-1.5.2-py27_0 instead of
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;; conda-1.3.5-py27_0.
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" and not test_auto_update_conda"
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;; This fails because the output directory is not a
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;; Conda environment.
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" and not test_list"
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;; This fails because we patched the default root
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;; prefix.
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" and not test_default_target_is_root_prefix"
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;; This fails because of missing features in python-flaky.
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" and not test_no_features"
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;; These fail because they require network access
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" and not test_no_ssl"
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" and not test_run_readonly_env"
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" and not test_run_returns_int"
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" and not test_run_returns_nonzero_errorlevel"
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" and not test_run_returns_zero_errorlevel"
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" and not test_run_uncaptured"
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;; These fail because ...
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;; TODO: conda patches its own shebang to
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;; $conda-prefix/bin/python, which is obviously wrong.
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" and not test_run_returns_int"
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" and not test_run_returns_zero_errorlevel"
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" and not test_run_returns_nonzero_errorlevel"
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;; TODO: I don't understand what this failure means
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" and not test_PrefixData_return_value_contract"
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;; TODO: same here
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" and not test_install_1"
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;; Not sure if this is really wrong. This fails because
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;; /gnu/store/...python-conda-4.8.3/bin/python
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;; is not /gnu/store/...python-wrapper-3.8.2/bin/python
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" and not test_make_entry_point"))))
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;; TODO: I don't understand what this failure means
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" and not test_PrefixData_return_value_contract"
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;; TODO: same here
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" and not test_install_1"
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;; Not sure if this is really wrong. This fails because
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;; /gnu/store/...conda-22.9.0/bin/python
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;; is not /gnu/store/...python-wrapper-3.9.9/bin/python
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" and not test_make_entry_point")))))
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(add-after 'install 'init
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;; This writes a whole bunch of shell initialization files to the
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;; prefix directory. Many features of conda can only be used after
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@ -1116,8 +1122,10 @@ extracting, creating, and converting between formats.")
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(list python-wrapper))
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(propagated-inputs
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(list python-anaconda-client
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python-boto3
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python-conda-package-handling
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python-cytoolz
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python-pluggy
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python-pycosat
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python-pytest
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python-pyyaml
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@ -1128,7 +1136,10 @@ extracting, creating, and converting between formats.")
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;; XXX: This is dragged in by libarchive and is needed at runtime.
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zstd))
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(native-inputs
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(list python-pytest-timeout))
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(list python-coverage
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python-flaky
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python-pytest-timeout
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python-pytest-xprocess))
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(home-page "https://github.com/conda/conda")
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(synopsis "Cross-platform, OS-agnostic, system-level binary package manager")
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(description
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