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gnu: Add r-activepathways.

* gnu/packages/bioconductor.scm (r-activepathways): New variable.
master
Ricardo Wurmus 2019-12-13 22:57:59 +01:00
parent 3e9e242aa5
commit 8e6f63dd83
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@ -6093,3 +6093,33 @@ simple somatic mutations (SNVs and Indels) in functional elements across the
human genome. ActiveDriverWGS detects coding and noncoding driver elements human genome. ActiveDriverWGS detects coding and noncoding driver elements
using whole genome sequencing data.") using whole genome sequencing data.")
(license license:gpl3))) (license license:gpl3)))
;; This is a CRAN package, but it depends on Bioconductor packages, so we put
;; it here.
(define-public r-activepathways
(package
(name "r-activepathways")
(version "1.0.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "ActivePathways" version))
(sha256
(base32
"1xb0d1svmzw404pv8ja6wr4773k7x2lxkrzrayilvzqbfzj1wx20"))))
(properties
`((upstream-name . "ActivePathways")))
(build-system r-build-system)
(propagated-inputs
`(("r-data-table" ,r-data-table)
("r-ggplot2" ,r-ggplot2)
("r-metap" ,r-metap)))
(home-page "https://cran.r-project.org/web/packages/ActivePathways/")
(synopsis "Multivariate pathway enrichment analysis")
(description
"This package represents an integrative method of analyzing multi omics
data that conducts enrichment analysis of annotated gene sets. ActivePathways
uses a statistical data fusion approach, rationalizes contributing evidence
and highlights associated genes, improving systems-level understanding of
cellular organization in health and disease.")
(license license:gpl3)))