gnu: Add openfoam.
*gnu/packages/patches/openfoam-4.1-cleanup.patch: New file *gnu/packages/simulation.scm: New file *gnu/local.mk (GNU_SYSTEM_MODULES): Add module. (dist_patch_DATA): Add patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
This commit is contained in:
		
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					 3 changed files with 457 additions and 0 deletions
				
			
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			@ -364,6 +364,7 @@ GNU_SYSTEM_MODULES =				\
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  %D%/packages/shells.scm			\
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  %D%/packages/shellutils.scm			\
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  %D%/packages/simh.scm				\
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  %D%/packages/simulation.scm			\
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  %D%/packages/skarnet.scm			\
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  %D%/packages/skribilo.scm			\
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  %D%/packages/slang.scm			\
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			@ -895,6 +896,7 @@ dist_patch_DATA =						\
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  %D%/packages/patches/ola-readdir-r.patch			\
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  %D%/packages/patches/openscenegraph-ffmpeg3.patch             \
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  %D%/packages/patches/openexr-missing-samples.patch		\
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  %D%/packages/patches/openfoam-4.1-cleanup.patch			\
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  %D%/packages/patches/openjpeg-CVE-2017-12982.patch		\
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  %D%/packages/patches/openjpeg-CVE-2017-14040.patch		\
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  %D%/packages/patches/openjpeg-CVE-2017-14041.patch		\
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										243
									
								
								gnu/packages/patches/openfoam-4.1-cleanup.patch
									
										
									
									
									
										Normal file
									
								
							
							
						
						
									
										243
									
								
								gnu/packages/patches/openfoam-4.1-cleanup.patch
									
										
									
									
									
										Normal file
									
								
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			@ -0,0 +1,243 @@
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# This patch removes all need for the ThirdParty files of OpenFOAM.
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# Derived from EasyBuild patch by Ward Poelmans <wpoely86@gmail.com>.
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# Modified for GNU Guix by Paul Garlick <pgarlick@tourbillion-technology.com>.
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diff -ur OpenFOAM-4.x-version-4.1.org/applications/utilities/mesh/manipulation/setSet/Allwmake OpenFOAM-4.x-version-4.1/applications/utilities/mesh/manipulation/setSet/Allwmake
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--- OpenFOAM-4.x-version-4.1.org/applications/utilities/mesh/manipulation/setSet/Allwmake
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+++ OpenFOAM-4.x-version-4.1/applications/utilities/mesh/manipulation/setSet/Allwmake
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@@ -9,7 +9,7 @@
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 #
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 # use readline if available
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 #
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-if [ -f /usr/include/readline/readline.h ]
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+if true
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 then
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     echo "Found <readline/readline.h>  --  enabling readline support."
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     export COMP_FLAGS="-DHAS_READLINE"
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diff -ur OpenFOAM-4.x-version-4.1.org/etc/bashrc OpenFOAM-4.x-version-4.1/etc/bashrc
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--- OpenFOAM-4.x-version-4.1.org/etc/bashrc
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+++ OpenFOAM-4.x-version-4.1/etc/bashrc
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@@ -43,8 +43,10 @@
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 # Please set to the appropriate path if the default is not correct.
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 #
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 [ $BASH_SOURCE ] && \
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-export FOAM_INST_DIR=$(cd ${BASH_SOURCE%/*/*/*} && pwd -P) || \
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+export FOAM_INST_DIR=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P) || \
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 export FOAM_INST_DIR=$HOME/$WM_PROJECT
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+# For GNU Guix: set initially for build then re-set at runtime
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+#
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 # export FOAM_INST_DIR=~$WM_PROJECT
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 # export FOAM_INST_DIR=/opt/$WM_PROJECT
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 # export FOAM_INST_DIR=/usr/local/$WM_PROJECT
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diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/CGAL OpenFOAM-4.x-version-4.1/etc/config.sh/CGAL
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--- OpenFOAM-4.x-version-4.1.org/etc/config.sh/CGAL
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+++ OpenFOAM-4.x-version-4.1/etc/config.sh/CGAL
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@@ -36,37 +36,7 @@
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 #
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 #------------------------------------------------------------------------------
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-boost_version=boost-system
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-cgal_version=cgal-system
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-#cgal_version=CGAL-4.8
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-
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-if [ -z "$SOURCE_CGAL_VERSIONS_ONLY" ]
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-then
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-
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-    common_path=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER
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-
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-    export BOOST_ARCH_PATH=$common_path/$boost_version
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-    export CGAL_ARCH_PATH=$common_path/$cgal_version
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-
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-    if [ "$FOAM_VERBOSE" -a "$PS1" ]
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-    then
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-        echo "Using CGAL and boost" 1>&2
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-        echo "    $cgal_version at $CGAL_ARCH_PATH" 1>&2
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-        echo "    $boost_version at $BOOST_ARCH_PATH" 1>&2
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-    fi
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-
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-    if [ -d "$CGAL_ARCH_PATH" -a "$cgal_version" != "cgal-system" ]
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-    then
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-        _foamAddLib $CGAL_ARCH_PATH/lib
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-    fi
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-
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-    if [ -d "$BOOST_ARCH_PATH" -a "$boost_version" != "boost-system" ]
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-    then
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-        _foamAddLib $BOOST_ARCH_PATH/lib
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-    fi
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-
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-    unset boost_version cgal_version common_path
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-
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-fi
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+export CGAL_ARCH_PATH=$CGAL_ROOT
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+export BOOST_ARCH_PATH=$BOOST_ROOT
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 #------------------------------------------------------------------------------
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diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/gperftools OpenFOAM-4.x-version-4.1/etc/config.sh/gperftools
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--- OpenFOAM-4.x-version-4.1.org/etc/config.sh/gperftools
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+++ OpenFOAM-4.x-version-4.1/etc/config.sh/gperftools
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@@ -29,13 +29,5 @@
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 #
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 #------------------------------------------------------------------------------
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-version=svn
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-gperftools_install=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER
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-
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-GPERFTOOLS_VERSION=gperftools-$version
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-GPERFTOOLS_ARCH_PATH=$gperftools_install/$GPERFTOOLS_VERSION
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-
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-export PATH=$GPERFTOOLS_ARCH_PATH/bin:$PATH
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-export LD_LIBRARY_PATH=$GPERFTOOLS_ARCH_PATH/lib:$LD_LIBRARY_PATH
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 #------------------------------------------------------------------------------
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diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/metis OpenFOAM-4.x-version-4.1/etc/config.sh/metis
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--- OpenFOAM-4.x-version-4.1.org/etc/config.sh/metis
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+++ OpenFOAM-4.x-version-4.1/etc/config.sh/metis
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@@ -34,7 +34,7 @@
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 #
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 #------------------------------------------------------------------------------
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-export METIS_VERSION=metis-5.1.0
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-export METIS_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$METIS_VERSION
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+export METIS_VERSION=metis-$METISVERSION
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+export METIS_ARCH_PATH=$METIS_ROOT
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 #------------------------------------------------------------------------------
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diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/scotch OpenFOAM-4.x-version-4.1/etc/config.sh/scotch
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--- OpenFOAM-4.x-version-4.1.org/etc/config.sh/scotch
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+++ OpenFOAM-4.x-version-4.1/etc/config.sh/scotch
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@@ -37,7 +37,7 @@
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 #
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 #------------------------------------------------------------------------------
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-export SCOTCH_VERSION=scotch_6.0.3
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-export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$SCOTCH_VERSION
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+export SCOTCH_VERSION=scotch_$SCOTCHVERSION
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+export SCOTCH_ARCH_PATH=$SCOTCH_ROOT
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 #------------------------------------------------------------------------------
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diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/settings OpenFOAM-4.x-version-4.1/etc/config.sh/settings
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--- OpenFOAM-4.x-version-4.1.org/etc/config.sh/settings
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+++ OpenFOAM-4.x-version-4.1/etc/config.sh/settings
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@@ -279,6 +279,9 @@
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     ;;
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 system)
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     # Use system compiler
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+    # Use system GMP and MPFR packages
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+    export GMP_ARCH_PATH=$GMP_ROOT
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+    export MPFR_ARCH_PATH=$MPFR_ROOT
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     ;;
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 *)
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     echo "Warn: WM_COMPILER_TYPE='$WM_COMPILER_TYPE' is unsupported" 1>&2
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diff -ur OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/ptscotchDecomp/Make/options OpenFOAM-4.x-version-4.1/src/parallel/decompose/ptscotchDecomp/Make/options
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--- OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/ptscotchDecomp/Make/options
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+++ OpenFOAM-4.x-version-4.1/src/parallel/decompose/ptscotchDecomp/Make/options
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@@ -5,8 +5,7 @@
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     $(PFLAGS) $(PINC) \
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     -I$(SCOTCH_ROOT)/include \
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     -I$(SCOTCH_ARCH_PATH)/include/$(FOAM_MPI) \
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-    -I/usr/include/scotch \
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     -I../decompositionMethods/lnInclude
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 LIB_LIBS = \
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-    -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit -lscotch ${LINK_FLAGS} -lrt
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+    -L$(SCOTCH_ROOT)/lib -L$(MPI_ARCH_PATH)/lib -lptscotch -lptscotcherrexit -lscotch ${LINK_FLAGS} -lrt
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diff -ur OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/scotchDecomp/Make/options OpenFOAM-4.x-version-4.1/src/parallel/decompose/scotchDecomp/Make/options
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--- OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/scotchDecomp/Make/options
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+++ OpenFOAM-4.x-version-4.1/src/parallel/decompose/scotchDecomp/Make/options
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@@ -9,8 +9,7 @@
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     $(PFLAGS) $(PINC) \
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     -I$(SCOTCH_ROOT)/include \
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     -I$(SCOTCH_ARCH_PATH)/include \
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-    -I/usr/include/scotch \
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     -I../decompositionMethods/lnInclude
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 LIB_LIBS = \
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-    -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN) -lscotch -lscotcherrexit -lrt
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+    -L$(SCOTCH_ROOT)/lib -lscotch -lscotcherrexit -lrt
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diff -ur OpenFOAM-4.x-version-4.1.org/wmake/makefiles/general OpenFOAM-4.x-version-4.1/wmake/makefiles/general
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--- OpenFOAM-4.x-version-4.1.org/wmake/makefiles/general
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+++ OpenFOAM-4.x-version-4.1/wmake/makefiles/general
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@@ -33,7 +33,6 @@
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 # The Makefile uses a POSIX shell
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 #------------------------------------------------------------------------------
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-SHELL           = /bin/sh
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 #------------------------------------------------------------------------------
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diff -ur OpenFOAM-4.x-version-4.1.org/wmake/wmake OpenFOAM-4.x-version-4.1/wmake/wmake
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--- OpenFOAM-4.x-version-4.1.org/wmake/wmake
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+++ OpenFOAM-4.x-version-4.1/wmake/wmake
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@@ -163,7 +163,7 @@
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 then
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     if [ "$WM_NCOMPPROCS" -gt 1 -a ! "$MAKEFLAGS" ]
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     then
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-        lockDir=$HOME/.$WM_PROJECT/.wmake
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+        lockDir=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P)/.$WM_PROJECT/.wmake
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 | 
			
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         if [ -d $lockDir ]
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         then
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diff -ur OpenFOAM-4.x-version-4.1.org/wmake/wmakeScheduler OpenFOAM-4.x-version-4.1/wmake/wmakeScheduler
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--- OpenFOAM-4.x-version-4.1.org/wmake/wmakeScheduler
 | 
			
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+++ OpenFOAM-4.x-version-4.1/wmake/wmakeScheduler
 | 
			
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@@ -53,7 +53,7 @@
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 # csh sets HOST, bash sets HOSTNAME
 | 
			
		||||
 : ${HOST:=$HOSTNAME}
 | 
			
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 | 
			
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-lockDir=$HOME/.$WM_PROJECT/.wmake
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+lockDir=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P)/.$WM_PROJECT/.wmake
 | 
			
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 | 
			
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 # Fallback - 1 core on current host
 | 
			
		||||
 : ${WM_HOSTS:=$HOST:1}
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diff -ur OpenFOAM-4.x-version-4.1.org/wmake/wmakeSchedulerUptime OpenFOAM-4.x-version-4.1/wmake/wmakeSchedulerUptime
 | 
			
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--- OpenFOAM-4.x-version-4.1.org/wmake/wmakeSchedulerUptime
 | 
			
		||||
+++ OpenFOAM-4.x-version-4.1/wmake/wmakeSchedulerUptime
 | 
			
		||||
@@ -53,7 +53,7 @@
 | 
			
		||||
 # csh sets HOST, bash sets HOSTNAME
 | 
			
		||||
 : ${HOST:=$HOSTNAME}
 | 
			
		||||
 
 | 
			
		||||
-lockDir=$HOME/.$WM_PROJECT/.wmake
 | 
			
		||||
+lockDir=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P)/.$WM_PROJECT/.wmake
 | 
			
		||||
 # Fallback - 1 core on current host
 | 
			
		||||
 : ${WM_HOSTS:=$HOST:1}
 | 
			
		||||
 
 | 
			
		||||
diff -ur OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/metisDecomp/metisDecomp.C OpenFOAM-4.x-version-4.1/src/parallel/decompose/metisDecomp/metisDecomp.C
 | 
			
		||||
--- OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/metisDecomp/metisDecomp.C
 | 
			
		||||
+++ OpenFOAM-4.x-version-4.1/src/parallel/decompose/metisDecomp/metisDecomp.C
 | 
			
		||||
@@ -67,7 +67,7 @@
 | 
			
		||||
 
 | 
			
		||||
     // Processor weights initialised with no size, only used if specified in
 | 
			
		||||
     // a file
 | 
			
		||||
-    Field<scalar> processorWeights;
 | 
			
		||||
+    Field<floatScalar> processorWeights;
 | 
			
		||||
 
 | 
			
		||||
     // Cell weights (so on the vertices of the dual)
 | 
			
		||||
     List<label> cellWeights;
 | 
			
		||||
diff -ur OpenFOAM-4.x-version-4.1.org/wmake/rules/General/CGAL OpenFOAM-4.x-version-4.1/wmake/rules/General/CGAL
 | 
			
		||||
--- OpenFOAM-4.x-version-4.1.org/wmake/rules/General/CGAL
 | 
			
		||||
+++ OpenFOAM-4.x-version-4.1/wmake/rules/General/CGAL
 | 
			
		||||
@@ -6,9 +6,10 @@
 | 
			
		||||
     -I/usr/include
 | 
			
		||||
 
 | 
			
		||||
 CGAL_LIBS = \
 | 
			
		||||
-    -L$(MPFR_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \
 | 
			
		||||
-    -L$(GMP_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \
 | 
			
		||||
+    -L$(MPFR_ARCH_PATH)/lib \
 | 
			
		||||
+    -L$(GMP_ARCH_PATH)/lib \
 | 
			
		||||
     -L$(BOOST_ARCH_PATH)/lib \
 | 
			
		||||
     -L$(CGAL_ARCH_PATH)/lib \
 | 
			
		||||
     -lCGAL \
 | 
			
		||||
+    -lgmp \
 | 
			
		||||
     -lmpfr
 | 
			
		||||
diff -ur OpenFOAM-4.x-version-4.1.org/wmake/rules/linux64Gcc/c++ OpenFOAM-4.x-version-4.1/wmake/rules/linux64Gcc/c++
 | 
			
		||||
--- OpenFOAM-4.x-version-4.1.org/wmake/rules/linux64Gcc/c++
 | 
			
		||||
+++ OpenFOAM-4.x-version-4.1/wmake/rules/linux64Gcc/c++
 | 
			
		||||
@@ -20,5 +20,5 @@
 | 
			
		||||
 | 
			
		||||
 LINK_LIBS   = $(c++DBUG)
 | 
			
		||||
 | 
			
		||||
-LINKLIBSO   = $(CC) $(c++FLAGS) -shared -Xlinker --add-needed -Xlinker --no-as-needed
 | 
			
		||||
-LINKEXE     = $(CC) $(c++FLAGS) -Xlinker --add-needed -Xlinker --no-as-needed
 | 
			
		||||
+LINKLIBSO   = $(CC) $(c++FLAGS) $(LDFLAGS) -shared -Xlinker --add-needed -Xlinker --no-as-needed
 | 
			
		||||
+LINKEXE     = $(CC) $(c++FLAGS) $(LDFLAGS) -Xlinker --add-needed -Xlinker --no-as-needed
 | 
			
		||||
							
								
								
									
										212
									
								
								gnu/packages/simulation.scm
									
										
									
									
									
										Normal file
									
								
							
							
						
						
									
										212
									
								
								gnu/packages/simulation.scm
									
										
									
									
									
										Normal file
									
								
							| 
						 | 
				
			
			@ -0,0 +1,212 @@
 | 
			
		|||
;;; GNU Guix --- Functional package management for GNU
 | 
			
		||||
;;; Copyright © 2017 Paul Garlick <pgarlick@tourbillion-technology.com>
 | 
			
		||||
;;;
 | 
			
		||||
;;; This file is part of GNU Guix.
 | 
			
		||||
;;;
 | 
			
		||||
;;; GNU Guix is free software; you can redistribute it and/or modify it
 | 
			
		||||
;;; under the terms of the GNU General Public License as published by
 | 
			
		||||
;;; the Free Software Foundation; either version 3 of the License, or (at
 | 
			
		||||
;;; your option) any later version.
 | 
			
		||||
;;;
 | 
			
		||||
;;; GNU Guix is distributed in the hope that it will be useful, but
 | 
			
		||||
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
;;; GNU General Public License for more details.
 | 
			
		||||
;;;
 | 
			
		||||
;;; You should have received a copy of the GNU General Public License
 | 
			
		||||
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 | 
			
		||||
 | 
			
		||||
(define-module (gnu packages simulation)
 | 
			
		||||
  #:use-module (gnu packages)
 | 
			
		||||
  #:use-module (gnu packages base)
 | 
			
		||||
  #:use-module (gnu packages bash)
 | 
			
		||||
  #:use-module (gnu packages bison)
 | 
			
		||||
  #:use-module (gnu packages boost)
 | 
			
		||||
  #:use-module (gnu packages compression)
 | 
			
		||||
  #:use-module (gnu packages flex)
 | 
			
		||||
  #:use-module (gnu packages gettext)
 | 
			
		||||
  #:use-module (gnu packages gcc)
 | 
			
		||||
  #:use-module (gnu packages gl)
 | 
			
		||||
  #:use-module (gnu packages graphics)
 | 
			
		||||
  #:use-module (gnu packages gtk)
 | 
			
		||||
  #:use-module (gnu packages linux)
 | 
			
		||||
  #:use-module (gnu packages m4)
 | 
			
		||||
  #:use-module (gnu packages maths)
 | 
			
		||||
  #:use-module (gnu packages mpi)
 | 
			
		||||
  #:use-module (gnu packages multiprecision)
 | 
			
		||||
  #:use-module (gnu packages ncurses)
 | 
			
		||||
  #:use-module (gnu packages readline)
 | 
			
		||||
  #:use-module (gnu packages tls)
 | 
			
		||||
  #:use-module (gnu packages version-control)
 | 
			
		||||
  #:use-module (gnu packages xml)
 | 
			
		||||
  #:use-module (gnu packages xorg)
 | 
			
		||||
  #:use-module (guix download)
 | 
			
		||||
  #:use-module (guix build utils)
 | 
			
		||||
  #:use-module (guix build-system gnu)
 | 
			
		||||
  #:use-module ((guix licenses) #:prefix license:)
 | 
			
		||||
  #:use-module (guix packages)
 | 
			
		||||
  #:use-module (guix utils)
 | 
			
		||||
  #:use-module (ice-9 ftw)
 | 
			
		||||
  #:use-module (ice-9 regex)
 | 
			
		||||
  #:use-module (srfi srfi-1))
 | 
			
		||||
 | 
			
		||||
(define-public openfoam
 | 
			
		||||
  (package
 | 
			
		||||
    (name "openfoam")
 | 
			
		||||
    (version "4.1")
 | 
			
		||||
    (source
 | 
			
		||||
     (origin
 | 
			
		||||
       (method url-fetch)
 | 
			
		||||
       (uri (string-append
 | 
			
		||||
             "http://dl.openfoam.org/source/"
 | 
			
		||||
             (string-map (lambda (x) (if (eq? x #\.) #\- x)) version)))
 | 
			
		||||
       (file-name (string-append name "-" version ".tar.gz"))
 | 
			
		||||
       (sha256
 | 
			
		||||
        (base32 "0cgxh4h2hf50qbvvdg5miwc2nympb0nrv3md96vb3gbs9vk8vq9d"))
 | 
			
		||||
       (patches (search-patches "openfoam-4.1-cleanup.patch"))))
 | 
			
		||||
    (build-system gnu-build-system)
 | 
			
		||||
    (inputs
 | 
			
		||||
     `(("boost" ,boost)
 | 
			
		||||
       ("cgal" ,cgal)
 | 
			
		||||
       ("flex" ,flex)
 | 
			
		||||
       ("git" ,git)
 | 
			
		||||
       ("gmp" ,gmp)
 | 
			
		||||
       ("libxt" ,libxt)
 | 
			
		||||
       ("metis" ,metis)
 | 
			
		||||
       ("mpfr" ,mpfr)
 | 
			
		||||
       ("ncurses" ,ncurses)
 | 
			
		||||
       ("readline" ,readline)
 | 
			
		||||
       ("scotch" ,pt-scotch32)
 | 
			
		||||
       ("zlib" ,zlib)))
 | 
			
		||||
    (native-inputs
 | 
			
		||||
     `(("bison" ,bison)))
 | 
			
		||||
    (propagated-inputs
 | 
			
		||||
     `(("gzip" ,gzip)
 | 
			
		||||
       ("gnuplot" ,gnuplot)
 | 
			
		||||
       ("openmpi" ,openmpi)))
 | 
			
		||||
    (arguments
 | 
			
		||||
     `( ;; Executable files and shared libraries are located in the 'platforms'
 | 
			
		||||
       ;; subdirectory.
 | 
			
		||||
       #:strip-directories (list (string-append
 | 
			
		||||
                                  "lib/OpenFOAM-" ,version
 | 
			
		||||
                                  "/platforms/linux64GccDPInt32Opt/bin")
 | 
			
		||||
                                 (string-append
 | 
			
		||||
                                  "lib/OpenFOAM-" ,version
 | 
			
		||||
                                  "/platforms/linux64GccDPInt32Opt/lib"))
 | 
			
		||||
       #:tests? #f                                ; no tests to run
 | 
			
		||||
 | 
			
		||||
       #:modules ((ice-9 ftw)
 | 
			
		||||
                  (ice-9 regex)
 | 
			
		||||
                  (guix build gnu-build-system)
 | 
			
		||||
                  (guix build utils))
 | 
			
		||||
 | 
			
		||||
       #:phases (modify-phases %standard-phases
 | 
			
		||||
                  (add-after 'unpack 'rename-build-directory
 | 
			
		||||
                    (lambda _
 | 
			
		||||
                      (chdir "..")
 | 
			
		||||
                      ;; Use 'OpenFOAM-version' convention to match the file
 | 
			
		||||
                      ;; name expectations in the build phase.
 | 
			
		||||
                      (let ((unpack-dir (string-append
 | 
			
		||||
                                         (getcwd) "/"
 | 
			
		||||
                                         (list-ref (scandir (getcwd) (lambda (name)
 | 
			
		||||
                                                                       (string-match "^OpenFOAM" name))) 0)))
 | 
			
		||||
                            (build-dir (string-append
 | 
			
		||||
                                        (getcwd) "/OpenFOAM-" ,version)))
 | 
			
		||||
                        (rename-file unpack-dir build-dir) ; rename build directory
 | 
			
		||||
                        (chdir (basename build-dir))) ; move to build directory
 | 
			
		||||
                      #t))
 | 
			
		||||
                  (delete 'configure)             ; no configure phase
 | 
			
		||||
                  (replace 'build
 | 
			
		||||
                    (lambda _
 | 
			
		||||
                      (let ((libraries '("boost" "cgal" "gmp" "metis" "mpfr" "scotch")))
 | 
			
		||||
                        ;; set variables to define store paths
 | 
			
		||||
                        (for-each (lambda (library)
 | 
			
		||||
                                    (setenv (string-append
 | 
			
		||||
                                             (string-upcase library) "_ROOT")
 | 
			
		||||
                                            (assoc-ref %build-inputs library))) libraries))
 | 
			
		||||
                      ;; set variables to define package versions
 | 
			
		||||
                      (setenv "SCOTCHVERSION" ,(package-version scotch))
 | 
			
		||||
                      (setenv "METISVERSION" ,(package-version metis))
 | 
			
		||||
                      ;; set variable to pass extra 'rpath' arguments to linker
 | 
			
		||||
                      (setenv "LDFLAGS"
 | 
			
		||||
                              (string-append
 | 
			
		||||
                               "-Wl,"
 | 
			
		||||
                               "-rpath=" %output "/lib/OpenFOAM-" ,version
 | 
			
		||||
                               "/platforms/linux64GccDPInt32Opt/lib,"
 | 
			
		||||
                               "-rpath=" %output "/lib/OpenFOAM-" ,version
 | 
			
		||||
                               "/platforms/linux64GccDPInt32Opt/lib/dummy"))
 | 
			
		||||
                      ;; compile OpenFOAM libraries and applications
 | 
			
		||||
                      (zero? (system (format #f
 | 
			
		||||
                                             "source ./etc/bashrc && ./Allwmake -j~a"
 | 
			
		||||
                                             (parallel-job-count))))))
 | 
			
		||||
                  (add-after 'build 'update-configuration-files
 | 
			
		||||
                    (lambda _
 | 
			
		||||
                      ;; record store paths and package versions in
 | 
			
		||||
                      ;; configuration files
 | 
			
		||||
                      (substitute* "etc/config.sh/CGAL"
 | 
			
		||||
                        (("$BOOST_ROOT") (getenv "BOOST_ROOT")))
 | 
			
		||||
                      (substitute* "etc/config.sh/CGAL"
 | 
			
		||||
                        (("$CGAL_ROOT") (getenv "CGAL_ROOT")))
 | 
			
		||||
                      (substitute* "etc/config.sh/metis"
 | 
			
		||||
                        (("$METIS_ROOT") (getenv "METIS_ROOT")))
 | 
			
		||||
                      (substitute* "etc/config.sh/metis"
 | 
			
		||||
                        (("$METISVERSION") (getenv "METISVERSION")))
 | 
			
		||||
                      (substitute* "etc/config.sh/scotch"
 | 
			
		||||
                        (("$SCOTCH_ROOT") (getenv "SCOTCH_ROOT")))
 | 
			
		||||
                      (substitute* "etc/config.sh/scotch"
 | 
			
		||||
                        (("$SCOTCHVERSION") (getenv "SCOTCHVERSION")))
 | 
			
		||||
                      (substitute* "etc/config.sh/settings"
 | 
			
		||||
                        (("$GMP_ROOT") (getenv "GMP_ROOT")))
 | 
			
		||||
                      (substitute* "etc/config.sh/settings"
 | 
			
		||||
                        (("$MPFR_ROOT") (getenv "MPFR_ROOT")))
 | 
			
		||||
                      ;; reset lockDir variable to refer to write-enabled
 | 
			
		||||
                      ;; directory
 | 
			
		||||
                      (substitute* "wmake/wmake"
 | 
			
		||||
                        (("        lockDir=.*$")
 | 
			
		||||
                         "        lockDir=$HOME/.$WM_PROJECT/.wmake\n"))
 | 
			
		||||
                      (substitute* "wmake/wmakeScheduler"
 | 
			
		||||
                        (("lockDir=.*$")
 | 
			
		||||
                         "lockDir=$HOME/.$WM_PROJECT/.wmake\n"))
 | 
			
		||||
                      (substitute* "wmake/wmakeSchedulerUptime"
 | 
			
		||||
                        (("lockDir=.*$")
 | 
			
		||||
                         "lockDir=$HOME/.$WM_PROJECT/.wmake\n"))
 | 
			
		||||
                      #t))
 | 
			
		||||
                  (replace 'install
 | 
			
		||||
                    (lambda _
 | 
			
		||||
                      ;; use 'OpenFOAM-version' convention
 | 
			
		||||
                      (let ((install-dir (string-append
 | 
			
		||||
                                          %output "/lib/OpenFOAM-" ,version)))
 | 
			
		||||
                        (mkdir-p install-dir)     ; create install directory
 | 
			
		||||
                        ;; move contents of build directory to install directory
 | 
			
		||||
                        (copy-recursively "." install-dir))))
 | 
			
		||||
                  (add-after 'install 'add-symbolic-link
 | 
			
		||||
                    (lambda _
 | 
			
		||||
                      ;; add symbolic link for standard 'bin' directory
 | 
			
		||||
                      (symlink
 | 
			
		||||
                       (string-append "./lib/OpenFOAM-" ,version
 | 
			
		||||
                                      "/platforms/linux64GccDPInt32Opt/bin")
 | 
			
		||||
                       (string-append %output "/bin"))
 | 
			
		||||
                      #t)))))
 | 
			
		||||
    ;; Note:
 | 
			
		||||
    ;;  Tutorial files are installed read-only in /gnu/store.
 | 
			
		||||
    ;;  To allow write permissions on files copied from the store a
 | 
			
		||||
    ;;  'chmod' step is needed before running the applications.  For
 | 
			
		||||
    ;;  example, from a user's login:
 | 
			
		||||
    ;;  $ source $GUIX_PROFILE/lib/OpenFOAM-4.1/etc/bashrc
 | 
			
		||||
    ;;  $ mkdir -p $FOAM_RUN
 | 
			
		||||
    ;;  $ cd $FOAM_RUN
 | 
			
		||||
    ;;  $ cp -r $FOAM_TUTORIALS/incompressible/simpleFoam/pitzdaily .
 | 
			
		||||
    ;;  $ cd pitzdaily
 | 
			
		||||
    ;;  $ chmod -R u+w .
 | 
			
		||||
    ;;  $ blockMesh
 | 
			
		||||
    (synopsis "Framework for numerical simulation of fluid flow")
 | 
			
		||||
    (description "OpenFOAM provides a set of solvers and methods for tackling
 | 
			
		||||
problems in the field of Computational Fluid Dynamics (CFD).  It is written in
 | 
			
		||||
C++.  Governing equations such as the Navier-Stokes equations can be solved in
 | 
			
		||||
integral form.  Physical processes such as phase change, droplet transport and
 | 
			
		||||
chemical reaction can be modelled.  Numerical methods are included to deal with
 | 
			
		||||
sharp gradients, such as those encountered in flows with shock waves and flows
 | 
			
		||||
with gas/liquid interfaces.  Large problems may be split into smaller, connected
 | 
			
		||||
problems for efficient solution on parallel systems")
 | 
			
		||||
    (license license:gpl3+)
 | 
			
		||||
    (home-page "https://openfoam.org")))
 | 
			
		||||
		Reference in a new issue