gnu: r-topgo: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-topgo): Move from here... * gnu/packages/bioconductor.scm (r-topgo): ...to here.master
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@ -2873,6 +2873,39 @@ experimental designs is facilitated by a consistently implemented sample
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annotation infrastructure.")
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(license license:artistic2.0)))
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(define-public r-topgo
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(package
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(name "r-topgo")
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(version "2.42.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "topGO" version))
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(sha256
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(base32
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"0vr3l9gvd3dhy446k3fkj6rm7z1abxi56rbnrs64297yzxaz1ngl"))))
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(properties
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`((upstream-name . "topGO")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-dbi" ,r-dbi)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-go-db" ,r-go-db)
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("r-graph" ,r-graph)
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("r-lattice" ,r-lattice)
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("r-matrixstats" ,r-matrixstats)
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("r-sparsem" ,r-sparsem)))
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(home-page "https://bioconductor.org/packages/topGO")
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(synopsis "Enrichment analysis for gene ontology")
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(description
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"The topGO package provides tools for testing @dfn{gene ontology} (GO)
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terms while accounting for the topology of the GO graph. Different test
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statistics and different methods for eliminating local similarities and
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dependencies between GO terms can be implemented and applied.")
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;; Any version of the LGPL applies.
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(license license:lgpl2.1+)))
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(define-public r-variantannotation
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(package
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(name "r-variantannotation")
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@ -7976,39 +7976,6 @@ including VCF header and contents in RDF and JSON.")
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information about the latest version of the Gene Ontologies.")
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(license license:artistic2.0)))
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(define-public r-topgo
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(package
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(name "r-topgo")
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(version "2.42.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "topGO" version))
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(sha256
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(base32
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"0vr3l9gvd3dhy446k3fkj6rm7z1abxi56rbnrs64297yzxaz1ngl"))))
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(properties
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`((upstream-name . "topGO")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-dbi" ,r-dbi)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-go-db" ,r-go-db)
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("r-graph" ,r-graph)
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("r-lattice" ,r-lattice)
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("r-matrixstats" ,r-matrixstats)
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("r-sparsem" ,r-sparsem)))
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(home-page "https://bioconductor.org/packages/topGO")
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(synopsis "Enrichment analysis for gene ontology")
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(description
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"The topGO package provides tools for testing @dfn{gene ontology} (GO)
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terms while accounting for the topology of the GO graph. Different test
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statistics and different methods for eliminating local similarities and
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dependencies between GO terms can be implemented and applied.")
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;; Any version of the LGPL applies.
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(license license:lgpl2.1+)))
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(define-public r-bsgenome
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(package
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(name "r-bsgenome")
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