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gnu: Add r-densvis.

* gnu/packages/bioconductor.scm (r-densvis): New variable.
master
Ricardo Wurmus 2023-04-28 16:05:41 +02:00
parent 90f67705f5
commit 91204fc357
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1 changed files with 31 additions and 0 deletions

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@ -4724,6 +4724,37 @@ array-like objects like @code{DataFrame} objects (typically with Rle columns),
@code{Matrix} objects, and ordinary arrays and data frames.")
(license license:artistic2.0)))
(define-public r-densvis
(package
(name "r-densvis")
(version "1.10.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "densvis" version))
(sha256
(base32
"0dwdlz2mvlkfa9x0x58lymfcaq00z35sliiac24l0kdg5chm35a8"))))
(properties `((upstream-name . "densvis")))
(build-system r-build-system)
(propagated-inputs (list r-assertthat r-basilisk r-irlba r-rcpp
r-reticulate))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/densvis")
(synopsis
"Density-preserving data visualization via non-linear dimensionality reduction")
(description
"This package implements the density-preserving modification to t-SNE and
UMAP described by Narayan et al. (2020) <doi:10.1101/2020.05.12.077776>.
den-SNE and densMAP aim to enable more accurate visual interpretation of
high-dimensional datasets by producing lower-dimensional embeddings that
accurately represent the heterogeneity of the original high-dimensional space,
enabling the identification of homogeneous and heterogeneous cell states.
This accuracy is accomplished by including in the optimisation process a term
which considers the local density of points in the original high-dimensional
space. This can help to create visualisations that are more representative of
heterogeneity in the original high-dimensional space.")
(license license:expat)))
(define-public r-derfinderhelper
(package
(name "r-derfinderhelper")