gnu: r-absfiltergsea: Move to (gnu packages bioconductor).
* gnu/packages/cran.scm (r-absfiltergsea): Move this variable from here... * gnu/packages/bioconductor.scm (r-absfiltergsea): ...to here.master
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@ -1315,6 +1315,34 @@ naming and share the same rich and consistent \"Vector API\" as much as
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possible.")
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(license license:artistic2.0)))
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;; This is a CRAN package, but it depends on r-biobase and r-limma from Bioconductor.
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(define-public r-absfiltergsea
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(package
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(name "r-absfiltergsea")
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(version "1.5.1")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "AbsFilterGSEA" version))
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(sha256
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(base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w"))))
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(properties `((upstream-name . "AbsFilterGSEA")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-deseq" ,r-deseq)
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("r-limma" ,r-limma)
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("r-rcpp" ,r-rcpp)
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("r-rcpparmadillo" ,r-rcpparmadillo)))
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(home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/")
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(synopsis "Improved false positive control of gene-permuting with absolute filtering")
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(description
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"This package provides a function that performs gene-permuting of a gene-set
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enrichment analysis (GSEA) calculation with or without the absolute filtering.
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Without filtering, users can perform (original) two-tailed or one-tailed
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absolute GSEA.")
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(license license:gpl2)))
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;; This is a CRAN package, but it depends on r-biobase from Bioconductor.
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(define-public r-bisquerna
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(package
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@ -26618,33 +26618,6 @@ include Markov models of discrete and continuous trait evolution and constant
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rate speciation and extinction.")
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(license license:gpl2+)))
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(define-public r-absfiltergsea
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(package
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(name "r-absfiltergsea")
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(version "1.5.1")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "AbsFilterGSEA" version))
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(sha256
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(base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w"))))
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(properties `((upstream-name . "AbsFilterGSEA")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-deseq" ,r-deseq)
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("r-limma" ,r-limma)
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("r-rcpp" ,r-rcpp)
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("r-rcpparmadillo" ,r-rcpparmadillo)))
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(home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/")
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(synopsis "Improved false positive control of gene-permuting with absolute filtering")
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(description
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"This package provides a function that performs gene-permuting of a gene-set
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enrichment analysis (GSEA) calculation with or without the absolute filtering.
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Without filtering, users can perform (original) two-tailed or one-tailed
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absolute GSEA.")
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(license license:gpl2)))
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(define-public r-calculus
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(package
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(name "r-calculus")
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