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gnu: r-absfiltergsea: Move to (gnu packages bioconductor).

* gnu/packages/cran.scm (r-absfiltergsea): Move this variable from here...
* gnu/packages/bioconductor.scm (r-absfiltergsea): ...to here.
master
zimoun 2021-03-17 21:14:13 +01:00 committed by Ricardo Wurmus
parent 172b85aa99
commit 9282218508
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2 changed files with 28 additions and 27 deletions

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@ -1315,6 +1315,34 @@ naming and share the same rich and consistent \"Vector API\" as much as
possible.") possible.")
(license license:artistic2.0))) (license license:artistic2.0)))
;; This is a CRAN package, but it depends on r-biobase and r-limma from Bioconductor.
(define-public r-absfiltergsea
(package
(name "r-absfiltergsea")
(version "1.5.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "AbsFilterGSEA" version))
(sha256
(base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w"))))
(properties `((upstream-name . "AbsFilterGSEA")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-deseq" ,r-deseq)
("r-limma" ,r-limma)
("r-rcpp" ,r-rcpp)
("r-rcpparmadillo" ,r-rcpparmadillo)))
(home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/")
(synopsis "Improved false positive control of gene-permuting with absolute filtering")
(description
"This package provides a function that performs gene-permuting of a gene-set
enrichment analysis (GSEA) calculation with or without the absolute filtering.
Without filtering, users can perform (original) two-tailed or one-tailed
absolute GSEA.")
(license license:gpl2)))
;; This is a CRAN package, but it depends on r-biobase from Bioconductor. ;; This is a CRAN package, but it depends on r-biobase from Bioconductor.
(define-public r-bisquerna (define-public r-bisquerna
(package (package

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@ -26618,33 +26618,6 @@ include Markov models of discrete and continuous trait evolution and constant
rate speciation and extinction.") rate speciation and extinction.")
(license license:gpl2+))) (license license:gpl2+)))
(define-public r-absfiltergsea
(package
(name "r-absfiltergsea")
(version "1.5.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "AbsFilterGSEA" version))
(sha256
(base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w"))))
(properties `((upstream-name . "AbsFilterGSEA")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-deseq" ,r-deseq)
("r-limma" ,r-limma)
("r-rcpp" ,r-rcpp)
("r-rcpparmadillo" ,r-rcpparmadillo)))
(home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/")
(synopsis "Improved false positive control of gene-permuting with absolute filtering")
(description
"This package provides a function that performs gene-permuting of a gene-set
enrichment analysis (GSEA) calculation with or without the absolute filtering.
Without filtering, users can perform (original) two-tailed or one-tailed
absolute GSEA.")
(license license:gpl2)))
(define-public r-calculus (define-public r-calculus
(package (package
(name "r-calculus") (name "r-calculus")