me
/
guix
Archived
1
0
Fork 0
Code

Merge branch 'master' into mesa-updates 

Change-Id: I4b468bb3148d392c9ade30dfe0cfb68c574a8e27
master
John Kehayias 2023-11-14 10:46:23 -05:00
parent ab307cbb58 bd0f217321
commit 92f113694f
No known key found for this signature in database
GPG Key ID: 499097AE5EA815D9
28 changed files with 47392 additions and 142 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

5
Makefile.am
View File

@ -18,6 +18,7 @@
# Copyright © 2021 Chris Marusich <cmmarusich@gmail.com>
# Copyright © 2021 Andrew Tropin <andrew@trop.in>
# Copyright © 2023 Clément Lassieur <clement@lassieur.org>
# Copyright © 2023 Wilko Meyer <w@wmeyer.eu>
#
# This file is part of GNU Guix.
#
@ -415,6 +416,10 @@ AUX_FILES = \
gnu/packages/aux-files/chromium/master-preferences.json \
gnu/packages/aux-files/emacs/guix-emacs.el \
gnu/packages/aux-files/guix.vim \
gnu/packages/aux-files/linux-libre/6.6-arm.conf \
gnu/packages/aux-files/linux-libre/6.6-arm64.conf \
gnu/packages/aux-files/linux-libre/6.6-i686.conf \
gnu/packages/aux-files/linux-libre/6.6-x86_64.conf \
gnu/packages/aux-files/linux-libre/6.5-arm.conf \
gnu/packages/aux-files/linux-libre/6.5-arm64.conf \
gnu/packages/aux-files/linux-libre/6.5-i686.conf \

13
etc/teams.scm
View File

@ -529,6 +529,15 @@ GLib/GIO, GTK, GStreamer and Webkit."
#:description "Audio related packages."
#:scope (list "gnu/packages/audio.scm")))
(define-team zig
(team 'zig
#:name "Zig team"
#:description "Zig, Zig packages, and the zig-build system"
#:scope (list "gnu/packages/zig.scm"
"gnu/packages/zig-xyz.scm"
"guix/build/zig-build-system.scm"
"guix/build-system/zig.scm")))
(define-member (person "Eric Bavier"
"bavier@posteo.net")
@ -662,6 +671,10 @@ GLib/GIO, GTK, GStreamer and Webkit."
"gabriel@erlikon.ch")
audio)
(define-member (person "Ekaitz Zarraga"
"ekaitz@elenq.tech")
bootstrap zig)
(define (find-team name)
(or (hash-ref %teams (string->symbol name))

4
gnu/local.mk
View File

@ -899,7 +899,9 @@ dist_patch_DATA = \
%D%/packages/patches/aegisub-make43.patch \
%D%/packages/patches/agda-categories-remove-incompatible-flags.patch \
%D%/packages/patches/agda-categories-use-find.patch \
%D%/packages/patches/agda-categories-use-stdlib-1.7.3.patch \
%D%/packages/patches/agda-libdirs-env-variable.patch \
%D%/packages/patches/agda-use-sphinx-5.patch \
%D%/packages/patches/agda-stdlib-use-runhaskell.patch \
%D%/packages/patches/agg-am_c_prototype.patch \
%D%/packages/patches/agg-2.5-gcc8.patch \
@ -1016,6 +1018,8 @@ dist_patch_DATA = \
%D%/packages/patches/clang-13.0-libc-search-path.patch \
%D%/packages/patches/clang-14.0-libc-search-path.patch \
%D%/packages/patches/clang-15.0-libc-search-path.patch \
%D%/packages/patches/clang-16.0-libc-search-path.patch \
%D%/packages/patches/clang-17.0-libc-search-path.patch \
%D%/packages/patches/clang-runtime-asan-build-fixes.patch \
%D%/packages/patches/clang-runtime-esan-build-fixes.patch \
%D%/packages/patches/clang-runtime-9-libsanitizer-mode-field.patch \

37
gnu/packages/agda.scm
View File

@ -44,7 +44,7 @@
(define-public agda
(package
(name "agda")
(version "2.6.3")
(version "2.6.4")
(source
(origin
(method git-fetch)
@ -53,12 +53,14 @@
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "1s7zd01i8pmvi90ywx497kc07z50nah7h0fc2dn6jzb132k5sh1q"))
(patches (search-patches "agda-libdirs-env-variable.patch"))))
(base32 "0n4avd58j45rdcmnwgrmz5s0ril0z4n2z711mwwbahl50f7359ky"))
(patches (search-patches "agda-libdirs-env-variable.patch"
"agda-use-sphinx-5.patch"))))
(build-system haskell-build-system)
(inputs
(list ghc-aeson
ghc-alex
ghc-ansi-terminal
ghc-async
ghc-blaze-html
ghc-boxes
@ -73,9 +75,11 @@
ghc-monad-control
ghc-murmur-hash
ghc-parallel
ghc-peano
ghc-regex-tdfa
ghc-split
ghc-strict
ghc-text-icu
ghc-unordered-containers
ghc-uri-encode
ghc-vector-hashtables
@ -91,6 +95,7 @@
(guix build utils)
(srfi srfi-26)
(ice-9 match))
#:configure-flags #~(list "-foptimise-heavily" "-fenable-cluster-counting")
#:phases
#~(modify-phases %standard-phases
;; This allows us to call the 'agda' binary before installing.
@ -194,7 +199,7 @@ come from Agda's standard library.")
(define-public agda-stdlib
(package
(name "agda-stdlib")
(version "1.7.2")
(version "1.7.3")
(source (origin
(method git-fetch)
(uri (git-reference
@ -203,7 +208,7 @@ come from Agda's standard library.")
(file-name (git-file-name name version))
(sha256
(base32
"065hf24xjpciwdrvk4isslgcgi01q0k93ql0y1sjqqvy5ryg5xmy"))))
"0y6rns64rrkh8hw7mamcf6797329pi4ravpak5zijpnkzdagmlmy"))))
(build-system agda-build-system)
(arguments
(list
@ -241,7 +246,8 @@ try agda-prelude instead.")
(base32
"0xwgm2mfl2pxipsv31bin8p14y1yhd9n27lv3clvsxd4z9yc034m"))
(patches (search-patches "agda-categories-remove-incompatible-flags.patch"
"agda-categories-use-find.patch"))))
"agda-categories-use-find.patch"
"agda-categories-use-stdlib-1.7.3.patch"))))
(build-system agda-build-system)
(arguments
(list
@ -259,12 +265,9 @@ try agda-prelude instead.")
(license license:expat)))
(define-public agda-cubical
;; Upstream's HEAD follows the latest Agda release, but they don't release
;; until a newer Agda release comes up, so their releases are always one
;; version late.
(package
(name "agda-cubical")
(version "0.5")
(version "0.6")
(source (origin
(method git-fetch)
(uri (git-reference
@ -273,7 +276,7 @@ try agda-prelude instead.")
(file-name (git-file-name name version))
(sha256
(base32
"0yfg7gr55n08ly1qgzpcp16s15k1abycppbcdi9lzg1hjryqxcg3"))))
"0zq0z328zcjmm43mrv2ks27i1dnbylcf8mhzja2hd4gvz1kq1ays"))))
(build-system agda-build-system)
(arguments
(list
@ -290,10 +293,10 @@ agda-stdlib but using cubical methods.")
(license license:expat)))
(define-public agda-1lab
;; Upstream doesn't do releases (yet). Use a commit that builds with 2.6.3,
;; Upstream doesn't do releases (yet). Use a commit that builds with 2.6.4,
;; since they use Agda HEAD.
(let* ((revision "1")
(commit "47ca1d23640a6f49a3abe3c2fe27738bcc10c9c6"))
(let* ((revision "2")
(commit "549fdb1c948a975e90e70f871993a4a4239aa280"))
(package
(name "agda-1lab")
(version (git-version "0.0" revision commit))
@ -306,10 +309,12 @@ agda-stdlib but using cubical methods.")
(file-name (git-file-name name version))
(sha256
(base32
"0j7mp6c0xd0849skdxzncklkxynxnyfrbpcjv4qp5p1xfn0dnfqx"))))
"1k4zj8dibyplakpxaw4a8hpsaqhakynjb83dqxrva4h4ssj6gkqj"))))
(build-system agda-build-system)
(arguments
(list #:plan '(("src/index\\.lagda\\.md$"))))
;; Check files individually first, to avoid running out of heap :(
(list #:plan '(("src/.+/.+\\.lagda\\.md$")
("src/index\\.lagda\\.md$"))))
(synopsis "Reference resource for mathematics done in Homotopy Type Theory")
(description "A formalised, cross-linked reference resource for
mathematics done in Homotopy Type Theory. Unlike the HoTT book, the 1lab is

10893
gnu/packages/aux-files/linux-libre/6.6-arm.conf 100644
View File

File diff suppressed because it is too large Load Diff

11639
gnu/packages/aux-files/linux-libre/6.6-arm64.conf 100644
View File

File diff suppressed because it is too large Load Diff

11793
gnu/packages/aux-files/linux-libre/6.6-i686.conf 100644
View File

File diff suppressed because it is too large Load Diff

12002
gnu/packages/aux-files/linux-libre/6.6-x86_64.conf 100644
View File

File diff suppressed because it is too large Load Diff

339
gnu/packages/bioconductor.scm
View File

@ -543,6 +543,28 @@ Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.")
as provided by UCSC (danRer11, May 2017) and stored in Biostrings objects.")
(license license:artistic2.0)))
(define-public r-bsgenome-ecoli-ncbi-20080805
(package
(name "r-bsgenome-ecoli-ncbi-20080805")
(version "1.3.1000")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "BSgenome.Ecoli.NCBI.20080805" version
'annotation))
(sha256
(base32 "1l7mjyys1kaq4mbia9jamyw6sd0ij1wypwxvwy8aksan3gcfnh27"))))
(properties `((upstream-name . "BSgenome.Ecoli.NCBI.20080805")))
(build-system r-build-system)
(propagated-inputs (list r-bsgenome))
(home-page
"https://bioconductor.org/packages/BSgenome.Ecoli.NCBI.20080805")
(synopsis "Escherichia coli full genomes")
(description
"This package provides Escherichia coli full genomes for several strains
as provided by NCBI on 2008/08/05 and stored in Biostrings objects.")
(license license:artistic2.0)))
(define-public r-bsgenome-hsapiens-1000genomes-hs37d5
(package
(name "r-bsgenome-hsapiens-1000genomes-hs37d5")
@ -1611,6 +1633,26 @@ biscuiteer.")
demonstrate functionalities of the @code{breakpointR} package.")
(license license:expat)))
(define-public r-breastcancervdx
(package
(name "r-breastcancervdx")
(version "1.40.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "breastCancerVDX" version
'experiment))
(sha256
(base32 "12r8zql30ssr0cxy8v1qawwsky54321c737ny19n2yrl7sm08gf0"))))
(properties `((upstream-name . "breastCancerVDX")))
(build-system r-build-system)
(home-page "https://bioconductor.org/packages/breastCancerVDX")
(synopsis "Gene expression datasets")
(description
"This package is a collection of gene expression data from a breast
cancer study published in Wang et al. 2005 and Minn et al 2007.")
(license license:artistic2.0)))
(define-public r-celldex
(package
(name "r-celldex")
@ -4201,6 +4243,27 @@ BaalChIP is able to account for copy number differences between the two
alleles, a known phenotypical feature of cancer samples.")
(license license:artistic2.0)))
(define-public r-bags
(package
(name "r-bags")
(version "2.42.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "BAGS" version))
(sha256
(base32 "0356ragpcldr48yycqj91sn3bcqvvfp5spv2z02r8g6hs0dndwdh"))))
(properties `((upstream-name . "BAGS")))
(build-system r-build-system)
(propagated-inputs (list r-biobase r-breastcancervdx))
(home-page "https://bioconductor.org/packages/BAGS")
(synopsis "Bayesian approach for geneset selection")
(description
"This R package is providing functions to perform geneset significance
analysis over simple cross-sectional data between 2 and 5 phenotypes of
interest.")
(license license:artistic2.0)))
(define-public r-basespacer
(package
(name "r-basespacer")
@ -22528,6 +22591,122 @@ within a certain time frame are deleted. This aims to reduce disk usage by
eliminating obsolete caches generated by old versions of packages.")
(license license:gpl3)))
(define-public r-basic4cseq
(package
(name "r-basic4cseq")
(version "1.38.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Basic4Cseq" version))
(sha256
(base32 "1vlrrkg885w77w34m2q8hngr95hhh5bkw9hrzyhnp39igjkcwqx4"))))
(properties `((upstream-name . "Basic4Cseq")))
(build-system r-build-system)
(propagated-inputs
(list r-biostrings
r-bsgenome-ecoli-ncbi-20080805
r-catools
r-genomicalignments
r-genomicranges
r-rcircos))
(home-page "https://bioconductor.org/packages/Basic4Cseq")
(synopsis "Analyzing 4C-seq data")
(description
"Basic4Cseq is an R package for basic filtering, analysis and subsequent
visualization of @acronym{4C-seq, circular chromosome conformation capture
sequencing} data. Virtual fragment libraries can be created for any BSGenome
package, and filter functions for both reads and fragments and basic quality
controls are included. Fragment data in the vicinity of the experiment's
viewpoint can be visualized as a coverage plot based on a running median
approach and a multi-scale contact profile.")
(license license:lgpl3)))
(define-public r-basics
(package
(name "r-basics")
(version "2.14.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "BASiCS" version))
(sha256
(base32 "0kf215n151sxphc5w9h4i2xsk7lmysi4abwcpyz4slbwhpki3ac8"))))
(properties `((upstream-name . "BASiCS")))
(build-system r-build-system)
(propagated-inputs
(list r-assertthat
r-biobase
r-biocgenerics
r-biocparallel
r-coda
r-cowplot
r-ggextra
r-ggplot2
r-hexbin
r-mass
r-matrix
r-matrixstats
r-posterior
r-rcpp
r-rcpparmadillo
r-reshape2
r-s4vectors
r-scran
r-scuttle
r-singlecellexperiment
r-summarizedexperiment
r-viridis))
(native-inputs (list r-knitr))
(home-page "https://github.com/catavallejos/BASiCS")
(synopsis "Bayesian analysis of single-cell sequencing data")
(description
"@acronym{BASiCS, Bayesian analysis of single-cell sequencing data} is an
integrated Bayesian hierarchical model to perform statistical analyses of
single-cell RNA sequencing datasets in the context of supervised experiments
(where the groups of cells of interest are known a priori. BASiCS performs
built-in data normalisation (global scaling) and technical noise quantification
(based on spike-in genes). BASiCS provides an intuitive detection criterion
for highly (or lowly) variable genes within a single group of cells.
Additionally, BASiCS can compare gene expression patterns between two or more
pre-specified groups of cells.")
(license license:gpl3)))
(define-public r-basicstarrseq
(package
(name "r-basicstarrseq")
(version "1.30.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "BasicSTARRseq" version))
(sha256
(base32 "1dw6bv1qk2bn0l3m458sqgvm3s1karh4n3431pl7r0jj2r3mr6xa"))))
(properties `((upstream-name . "BasicSTARRseq")))
(build-system r-build-system)
(propagated-inputs
(list r-genomeinfodb
r-genomicalignments
r-genomicranges
r-iranges
r-s4vectors))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/BasicSTARRseq")
(synopsis "Basic peak calling on STARR-seq data")
(description
"This package implements a method that aims to identify enhancers on
large scale. The STARR-seq data consists of two sequencing datasets of the
same targets in a specifc genome. The input sequences show which regions
where tested for enhancers. Significant enriched peaks i.e. a lot more
sequences in one region than in the input where enhancers in the genomic DNA
are, can be identified. So the approach pursued is to call peak every region
in which there is a lot more
(significant in a binomial model) STARR-seq signal than input signal and
propose an enhancer at that very same position. Enhancers then are called
weak or strong dependent of there degree of enrichment in comparison to
input.")
(license license:lgpl3)))
(define-public r-basilisk-utils
(package
(name "r-basilisk-utils")
@ -22578,6 +22757,166 @@ Functions are also provided to enable smooth interoperability of multiple
Python environments in a single R session.")
(license license:gpl3)))
(define-public r-bayesknockdown
(package
(name "r-bayesknockdown")
(version "1.28.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "BayesKnockdown" version))
(sha256
(base32 "1argd4gfld2yb0vvpgb5k7m6agmi58712f6g5dj4gnb7kg4rp1l8"))))
(properties `((upstream-name . "BayesKnockdown")))
(build-system r-build-system)
(propagated-inputs (list r-biobase))
(home-page "https://bioconductor.org/packages/BayesKnockdown")
(synopsis "Posterior probabilities for edges from knockdown data")
(description
"This package provides a simple, fast Bayesian method for computing
posterior probabilities for relationships between a single predictor variable
and multiple potential outcome variables, incorporating prior probabilities of
relationships. In the context of knockdown experiments, the predictor
variable is the knocked-down gene, while the other genes are potential
targets. It can also be used for differential expression/2-class data.")
(license license:gpl3)))
(define-public r-bayesspace
(package
(name "r-bayesspace")
(version "1.12.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "BayesSpace" version))
(sha256
(base32 "1mqgsylnrvf197cin5zzihjv31bm2q0m5a612ncbglys6n1jd105"))))
(properties `((upstream-name . "BayesSpace")))
(build-system r-build-system)
(propagated-inputs
(list r-assertthat
r-biocfilecache
r-biocsingular
r-coda
r-dirichletreg
r-ggplot2
r-matrix
r-mclust
r-purrr
r-rcpp
r-rcpparmadillo
r-rcppdist
r-rcppprogress
r-rcurl
r-rhdf5
r-s4vectors
r-scales
r-scater
r-scran
r-singlecellexperiment
r-summarizedexperiment
r-xgboost))
(native-inputs (list r-knitr))
(home-page "https://www.ezstatconsulting.com/BayesSpace/")
(synopsis "Clustering and resolution enhancement of spatial transcriptomes")
(description
"This package provides tools for clustering and enhancing the resolution
of spatial gene expression experiments. BayesSpace clusters a low-dimensional
representation of the gene expression matrix, incorporating a spatial prior to
encourage neighboring spots to cluster together. The method can enhance the
resolution of the low-dimensional representation into \"sub-spots\", for which
features such as gene expression or cell type composition can be imputed.")
(license license:expat)))
(define-public r-baynorm
(package
(name "r-baynorm")
(version "1.20.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "bayNorm" version))
(sha256
(base32 "01lv4w1x43x3f9sdrqikhsr1gdvkgqzrgcd9wnjj76qsljn57ifq"))))
(properties `((upstream-name . "bayNorm")))
(build-system r-build-system)
(propagated-inputs
(list r-bb
r-biocparallel
r-dosnow
r-fitdistrplus
r-foreach
r-iterators
r-locfit
r-mass
r-matrix
r-rcpp
r-rcpparmadillo
r-rcppprogress
r-singlecellexperiment
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://github.com/WT215/bayNorm")
(synopsis "Single-cell RNA sequencing data normalization")
(description
"The bayNorm package is used for normalizing single-cell RNA-seq data.
The main function is @code{bayNorm}, which is a wrapper function for gene
specific prior parameter estimation and normalization. The input is a matrix
of scRNA-seq data with rows different genes and coloums different cells. The
output is either point estimates from posterior (2D array) or samples from
posterior (3D array).")
(license license:gpl2+)))
(define-public r-bbcanalyzer
(package
(name "r-bbcanalyzer")
(version "1.32.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "BBCAnalyzer" version))
(sha256
(base32 "108jcgsf5hyj348y17hcw8m3zcfjgzpx8nz4n5jgxp2lgxjyizy1"))))
(properties `((upstream-name . "BBCAnalyzer")))
(build-system r-build-system)
(propagated-inputs
(list r-biostrings
r-genomicranges
r-iranges
r-rsamtools
r-summarizedexperiment
r-variantannotation))
(home-page "https://bioconductor.org/packages/BBCAnalyzer")
(synopsis "Visualizing base counts")
(description
"BBCAnalyzer is a package for visualizing the relative or absolute number
of bases, deletions and insertions at defined positions in sequence alignment
data available as bam files in comparison to the reference bases. Markers for
the relative base frequencies, the mean quality of the detected bases, known
mutations or polymorphisms and variants called in the data may additionally be
included in the plots.")
(license license:lgpl3)))
(define-public r-bcrank
(package
(name "r-bcrank")
(version "1.64.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "BCRANK" version))
(sha256
(base32 "1m1ccacryf8wjzp0d37n9n1kpa6734ddb8nvv1sy0sz5gplrars9"))))
(properties `((upstream-name . "BCRANK")))
(build-system r-build-system)
(propagated-inputs (list r-biostrings))
(home-page "https://bioconductor.org/packages/BCRANK")
(synopsis "Predicting binding site consensus from ranked DNA sequences")
(description
"This package provides functions and classes for de novo prediction of
transcription factor binding consensus by heuristic search.")
(license license:gpl2)))
(define-public r-biocthis
(package
(name "r-biocthis")

35
gnu/packages/bioinformatics.scm
View File

@ -15657,6 +15657,41 @@ analysing cytometry data in R.")
spatial single-cell expression data.")
(license license:expat))))
;; Variant of r-illuminahumanmethylationepicmanifest in the
;; (gnu packages bioconductor) module.
(define-public r-illuminahumanmethylationepicmanifest-latest
(let ((commit "a9ffbad36f5e496ece6c4c37b80e2f4f7e02d0c3")
(revision "1"))
(package
(name "r-illuminahumanmethylationepicmanifest")
(version (git-version "1.0.0" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url
"https://github.com/achilleasNP/IlluminaHumanMethylationEPICmanifest")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "0v8f0hl0v8gwi61vgqw56rn5j09h95hj54rb8pzbn0znm162n4fc"))))
(properties `((upstream-name . "IlluminaHumanMethylationEPICmanifest")))
(build-system r-build-system)
(home-page
"https://github.com/achilleasNP/IlluminaHumanMethylationEPICmanifest")
(synopsis "Illumina Human Methylation Manifest 1.0 B5 for R and minfi")
(description
"This is a drop-in replacement for the
@code{IlluminaHumanMethylationEPIC} package. It utilizes a Manifest based on
1.0B5 annotation. As of version 0.3.0, the
@code{IlluminaHumanMethylationEPIC} package still employs the 1.0B2 annotation
manifest. A corresponding annotation package,
@code{IlluminaHumanMethylationEPICanno.ilm10b5.hg38}, is available to ensure
proper annotation. The decision to maintain the same name is due to
complications in downstream processing caused by array name lookup in certain
preprocessing options.")
(license license:artistic2.0))))
(define-public r-illuminahumanmethylationepicanno-ilm10b5-hg38
(let ((commit "3db06910e27f626e0cc8b335ff45cf9a4050a36a")
(revision "1"))

45
gnu/packages/cran.scm
View File

@ -6206,6 +6206,30 @@ and Francois (2011, JSS), and the book by Eddelbuettel (2013, Springer); see
performs global optimization by differential evolution.")
(license license:gpl2+)))
(define-public r-rcppdist
(package
(name "r-rcppdist")
(version "0.1.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "RcppDist" version))
(sha256
(base32 "02g57xwfipdcljv06krhm02dbqn9kfyj2km6rdg0a7vq9prwdz1x"))))
(properties `((upstream-name . "RcppDist")))
(build-system r-build-system)
(propagated-inputs (list r-rcpp r-rcpparmadillo))
(native-inputs (list r-knitr))
(home-page "https://github.com/duckmayr/RcppDist")
(synopsis "Integration of additional probability distributions")
(description
"RcppDist provides a header-only C++ library with functions for
additional statistical distributions that can be called from C++ when writing
code using Rcpp or RcppArmadillo. Functions are available that return a
@code{NumericVector} as well as doubles, and for multivariate or matrix
distributions, Armadillo vectors and matrices.")
(license license:gpl2+)))
(define-public r-rcppml
(package
(name "r-rcppml")
@ -6316,6 +6340,27 @@ with Rcpp and retrieve an @code{XPtr} that can be passed to other C++
components.")
(license license:expat)))
(define-public r-bb
(package
(name "r-bb")
(version "2019.10-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "BB" version))
(sha256
(base32 "0kf9sfsm3n036a8a8gjfpc9qdryvadb019kqjh80n1szdv7bdl04"))))
(properties `((upstream-name . "BB")))
(build-system r-build-system)
(propagated-inputs (list r-quadprog))
(home-page "https://publichealth.jhu.edu/")
(synopsis "Solving and optimizing large-scale nonlinear systems")
(description
"This package implements Barzilai-Borwein spectral methods for solving
nonlinear system of equations, and for optimizing nonlinear objective
functions subject to simple constraints.")
(license license:gpl3)))
(define-public r-bindr
(package
(name "r-bindr")

109
gnu/packages/emacs-xyz.scm
View File

@ -8348,7 +8348,7 @@ for Flow files.")
(define-public emacs-flycheck-grammalecte
(package
(name "emacs-flycheck-grammalecte")
(version "2.0")
(version "2.4")
(source
(origin
(method git-fetch)
@ -8357,39 +8357,39 @@ for Flow files.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "040mb9djj4cxpjsjch9i30pi36a2z7grkhnsnfdi5qyh341p4pq0"))))
(base32 "0vsf0zsqqfaarwq1k34kg5sqgywzr6dklqv093imm9q6ys18p8c4"))))
(build-system emacs-build-system)
(arguments
`(#:include (cons "\\.py$" %default-include)
#:exclude '("^test-profile.el$")
#:emacs ,emacs ;need libxml support
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'specify-python-location
;; Hard-code python3 executable location in the library.
(lambda* (#:key inputs #:allow-other-keys)
(let ((python3 (search-input-file inputs "/bin/python3")))
(substitute* '("flycheck-grammalecte.el" "grammalecte.el")
(("\"python3") (string-append "\"" python3)))
(substitute* '("conjugueur.py" "flycheck_grammalecte.py")
(("/usr/bin/env python3?") python3)))))
(add-after 'unpack 'specify-grammalecte-location
;; Use our own Grammalecte.
(lambda* (#:key inputs #:allow-other-keys)
(make-file-writable "grammalecte.el")
(emacs-substitute-variables "grammalecte.el"
("grammalecte-python-package-directory"
(search-input-directory
inputs
(string-append "lib/python"
,(version-major+minor (package-version python))
"/site-packages/grammalecte"))))))
(add-after 'unpack 'do-not-phone-home
;; Do not check for Grammalecte updates, ever.
(lambda _
(make-file-writable "grammalecte.el")
(emacs-substitute-variables "grammalecte.el"
("grammalecte-check-upstream-version-delay" 0)))))))
(list
#:include #~(cons "\\.py$" %default-include)
#:emacs emacs-no-x ;need libxml support
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'specify-python-location
;; Hard-code python3 executable location in the library.
(lambda* (#:key inputs #:allow-other-keys)
(let ((python3 (search-input-file inputs "/bin/python3")))
(substitute* '("flycheck-grammalecte.el" "grammalecte.el")
(("\"python3") (string-append "\"" python3)))
(substitute* '("conjugueur.py" "flycheck_grammalecte.py")
(("/usr/bin/env python3?") python3)))))
(add-after 'unpack 'specify-grammalecte-location
;; Use our own Grammalecte.
(lambda* (#:key inputs #:allow-other-keys)
(make-file-writable "grammalecte.el")
(emacs-substitute-variables "grammalecte.el"
("grammalecte-python-package-directory"
(search-input-directory
inputs
(string-append "lib/python"
#$(version-major+minor (package-version python))
"/site-packages/grammalecte"))))))
(add-after 'unpack 'do-not-phone-home
;; Do not check for Grammalecte updates, ever.
(lambda _
(make-file-writable "grammalecte.el")
(emacs-substitute-variables "grammalecte.el"
("grammalecte-check-upstream-version-delay" 0)))))))
(inputs
(list grammalecte python))
(propagated-inputs
@ -9017,14 +9017,14 @@ variables, and so on. The mode also allows you to execute Tup commands.")
(define-public emacs-compat
(package
(name "emacs-compat")
(version "29.1.4.3")
(version "29.1.4.4")
(source (origin
(method url-fetch)
(uri (string-append "https://elpa.gnu.org/packages/"
"compat-" version ".tar"))
(sha256
(base32
"08lg6jph1hqkamf1fhm5ajwy4klh2a2260llr1z7wlbbq52032k5"))))
"0710g552b1nznnfx2774gmg6yizs27s0bakqm95nsjrp6kgznbfr"))))
(build-system emacs-build-system)
(home-page "https://git.sr.ht/~pkal/compat")
(synopsis "Emacs Lisp Compatibility Library")
@ -16416,7 +16416,7 @@ passive voice.")
(define-public emacs-org
(package
(name "emacs-org")
(version "9.6.11")
(version "9.6.12")
(source
(origin
(method git-fetch)
@ -16425,7 +16425,7 @@ passive voice.")
(commit (string-append "release_" version))))
(file-name (git-file-name name version))
(sha256
(base32 "167cnc7iq5i278a7rph2rs9dhxb5anckzjz5d4anbkghzk48qa9x"))))
(base32 "1anzvsa7kj2rp419qc5rv8jz50h7np391lcgbxcin727njyc7wpr"))))
(build-system emacs-build-system)
(arguments
(list
@ -16756,11 +16756,10 @@ basic syntax highlighting and indentation.")
(license license:gpl3+)))
(define-public emacs-danneskjold-theme
(let* ((commit "e4d1f2c76245fe9d0d07133a841e789d139df28d")
(revision "2"))
(let ((commit "b3335e44f468c019c95a8210ce1ed9fe23c65735")) ;version bump
(package
(name "emacs-danneskjold-theme")
(version (git-version "0.0.0" revision commit))
(version "20231110.0")
(source
(origin
(method git-fetch)
@ -16769,14 +16768,15 @@ basic syntax highlighting and indentation.")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "1ii3cgf4hlclwaraisxksv98mmhajx517i60p1cgd7vapznn2b6v"))))
(base32 "19lncwxzxyi73cn7439rk8cvgcj6l4x1kj6fykmw3b18s7rj555f"))))
(build-system emacs-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'delete-screenshots
(lambda _
(delete-file-recursively "screenshots"))))))
(list
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'delete-screenshots
(lambda _
(delete-file-recursively "screenshots"))))))
(home-page "https://github.com/rails-to-cosmos/danneskjold-theme")
(synopsis "High-contrast Emacs theme")
(description
@ -16784,11 +16784,10 @@ basic syntax highlighting and indentation.")
(license license:gpl3+))))
(define-public emacs-dream-theme
(let* ((commit "107a11d74365046f28a1802a2bdb5e69e4a7488b")
(revision "1"))
(let ((commit "62caa37d5f1ddb1187ee0b9e7dd9833679cc5eb5")) ;version bump
(package
(name "emacs-dream-theme")
(version (string-append "0.0.0-" revision "." (string-take commit 7)))
(version "1.0")
(source
(origin
(method git-fetch)
@ -16798,7 +16797,7 @@ basic syntax highlighting and indentation.")
(file-name (git-file-name name version))
(sha256
(base32
"0za18nfkq4xqm35k6006vsixcbmvmxqgma4iw5sw37h8vmcsdylk"))))
"13ziwd6cw8s8gyzbklxlvpvbx5dbchvvhlxq9pi8vn3zlzpprd6h"))))
(build-system emacs-build-system)
(home-page "https://github.com/djcb/dream-theme")
(synopsis "High-contrast Emacs theme")
@ -16810,7 +16809,7 @@ by zenburn, sinburn and similar themes, but slowly diverging from them.")
(define-public emacs-dracula-theme
(package
(name "emacs-dracula-theme")
(version "1.8.1")
(version "1.8.2")
(source
(origin
(method git-fetch)
@ -16819,7 +16818,7 @@ by zenburn, sinburn and similar themes, but slowly diverging from them.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "0mb7pix1wbmg4laba06fvcb8q822584iq0cw8mwf0nzaf1yh12l8"))))
(base32 "0hjimiv6a0kaszypndb5l0axhiv0zih728p8wffil6jff9k8pr38"))))
(build-system emacs-build-system)
(home-page "https://draculatheme.com/")
(synopsis "Dark theme for Emacs")
@ -17023,7 +17022,7 @@ you to deal with multiple log levels.")
(define-public emacs-denote
(package
(name "emacs-denote")
(version "2.0.0")
(version "2.1.0")
(source
(origin
(method git-fetch)
@ -17032,7 +17031,7 @@ you to deal with multiple log levels.")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32 "0nwqghh73lbw6v6yhkalcwwqjs1fyhxqi53d9y2dcfhfq58g1rb9"))))
(base32 "1gfjckqh170z8slhm0wdqf0570ywgni7b1wdnifxf5cb69h3izpr"))))
(build-system emacs-build-system)
(native-inputs (list texinfo))
(home-page "https://protesilaos.com/emacs/denote/")
@ -26830,7 +26829,7 @@ image, rotate it, save modified images, and more.")
(define-public emacs-package-lint
(package
(name "emacs-package-lint")
(version "0.20")
(version "0.21")
(source
(origin
(method git-fetch)
@ -26840,7 +26839,7 @@ image, rotate it, save modified images, and more.")
(file-name (git-file-name name version))
(sha256
(base32
"1v12l8mbsrgkq5rmgzypkiabhfrd5cq6nrnmsairnpw8rrz4w739"))))
"1y0h8rrmvi3j5maig6i69kxxr1igb96075vpzbycaqln3xn11g36"))))
(arguments
(list #:include #~(cons "^data/" %default-include)))
(build-system emacs-build-system)

10
gnu/packages/gnuzilla.scm
View File

@ -1057,10 +1057,12 @@ variable defined below. It requires guile-json to be installed."
(lambda* (#:key (make-flags '()) (parallel-build? #t)
#:allow-other-keys)
(apply invoke "./mach" "build"
;; mach will use parallel build if possible by default
`(,@(if parallel-build?
'()
'("-j1"))
;; mach will use a wide parallel build if possible by
;; default, so reign it in if requested.
`(,(string-append
"-j" (number->string (if parallel-build?
(parallel-job-count)
1)))
,@make-flags))))
(add-after 'build 'neutralise-store-references
(lambda _

6
gnu/packages/guile-xyz.scm
View File

@ -1284,8 +1284,8 @@ works with Guile 1.4.x to 2.0.x.")
(license license:gpl3+)))
(define-public guile-prometheus
(let ((commit "35dc26c0ea44c3d70f1819f240d84e2cbb4b7b4c")
(revision "5"))
(let ((commit "4aaf902eb45b3a4c1003f854bda56c516fdf4f5b")
(revision "6"))
(package
(name "guile-prometheus")
(version (git-version "0" revision commit))
@ -1296,7 +1296,7 @@ works with Guile 1.4.x to 2.0.x.")
(commit commit)))
(sha256
(base32
"07822jj4appw37lf444kc4xlgl7nm64mgldag56072l55kwashgb"))
"03sr7wgksi9ys6jyzsnwanl2qqa8csi8jzcgrc3wfzp17vcc16yi"))
(file-name (string-append name "-" version "-checkout"))))
(build-system gnu-build-system)
(native-inputs

8
gnu/packages/hardware.scm
View File

@ -1089,11 +1089,17 @@ technology, such as head mounted displays with built in head tracking.")
(("dependencies/json")
(string-append #$(this-package-input "nlohmann-json")
"/include/nlohmann")))))
(add-after 'unpack 'patch-chmod
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "scripts/build-udev-rules.sh"
(("/bin/chmod") (string-append (assoc-ref inputs "coreutils")
"/bin/chmod")))))
;; Call qmake instead of configure to create a Makefile.
(replace 'configure
(lambda _ (invoke "qmake" "PREFIX=/" "OpenRGB.pro"))))))
(inputs
(list hidapi
(list coreutils
hidapi
hueplusplus
nlohmann-json
libusb

41
gnu/packages/haskell-xyz.scm
View File

@ -65,6 +65,7 @@
#:use-module (gnu packages haskell-check)
#:use-module (gnu packages haskell-crypto)
#:use-module (gnu packages haskell-web)
#:use-module (gnu packages icu4c)
#:use-module (gnu packages libffi)
#:use-module (gnu packages linux)
#:use-module (gnu packages llvm)
@ -8352,6 +8353,46 @@ require aeson
(description "Safe conversions between textual types")
(license license:isc)))
(define-public ghc-text-icu
(package
(name "ghc-text-icu")
(version "0.8.0.4")
(source
(origin
(method url-fetch)
(uri (hackage-uri "text-icu" version))
(sha256
(base32 "1yj0jdjrsx12sy6lj1gizb2ys5likp9rcv8ryc6sjf2dw74097rd"))))
(build-system haskell-build-system)
(properties '((upstream-name . "text-icu")))
(inputs (list icu4c))
(native-inputs (list ghc-hunit
ghc-quickcheck
ghc-random
ghc-test-framework
ghc-test-framework-hunit
ghc-test-framework-quickcheck2
pkg-config))
(home-page "https://github.com/haskell/text-icu")
(synopsis "Bindings to the ICU library")
(description
"Haskell bindings to the International Components for Unicode (ICU) libraries.
These libraries provide robust and full-featured Unicode services on a wide
variety of platforms. . Features include: . * Both pure and impure bindings, to
allow for fine control over efficiency and ease of use. . * Breaking of strings
on character, word, sentence, and line boundaries. . * Access to the Unicode
Character Database (UCD) of character metadata. . * String collation functions,
for locales where the conventions for lexicographic ordering differ from the
simple numeric ordering of character codes. . * Character set conversion
functions, allowing conversion between Unicode and over 220 character encodings.
. * Unicode normalization. (When implementations keep strings in a normalized
form, they can be assured that equivalent strings have a unique binary
representation.) . * Regular expression search and replace. . * Security checks
for visually confusable (spoofable) strings. . * Bidirectional Unicode algorithm
. * Calendar objects holding dates and times. . * Number and calendar
formatting.")
(license license:bsd-3)))
(define-public ghc-text-short
(package
(name "ghc-text-short")

7
gnu/packages/image-processing.scm
View File

@ -1412,7 +1412,12 @@ combine the information contained in both.")
(uri (string-append "mirror://sourceforge/itk/itk/4.12/"
"InsightToolkit-" version ".tar.xz"))
(sha256
(base32 "1qw9mxbh083siljygahl4gdfv91xvfd8hfl7ghwii19f60xrvn2w"))))))
(base32 "1qw9mxbh083siljygahl4gdfv91xvfd8hfl7ghwii19f60xrvn2w"))))
(arguments
(substitute-keyword-arguments (package-arguments insight-toolkit-4)
((#:configure-flags cf #~'())
;; error: ISO C++17 does not allow dynamic exception specifications
#~(cons* "-DCMAKE_CXX_FLAGS=-std=c++14" #$cf))))))
(define-public itk-snap
(package

63
gnu/packages/linux.scm
View File

@ -493,7 +493,22 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
;; The current "stable" kernels. That is, the most recently released major
;; versions that are still supported upstream.
(define-public linux-libre-6.5-version "6.5.10")
(define-public linux-libre-6.6-version "6.6.1")
(define-public linux-libre-6.6-gnu-revision "gnu")
(define deblob-scripts-6.6
(linux-libre-deblob-scripts
linux-libre-6.6-version
linux-libre-6.6-gnu-revision
(base32 "0g8m0rb15b0231dv8ji456s75a67szsaim71may3yprplycz6pav")
(base32 "1hg3ck1j8288fhlhcvhgs1zzwh3i62nfvphw7x3vsaqr75kiwbjp")))
(define-public linux-libre-6.6-pristine-source
(let ((version linux-libre-6.6-version)
(hash (base32 "0d42b1hbvv9w3y3q4wydr6il0g5a823n54a06p4p5vcpgkadf7ns")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-6.6)))
(define-public linux-libre-6.5-version "6.5.11")
(define-public linux-libre-6.5-gnu-revision "gnu")
(define deblob-scripts-6.5
(linux-libre-deblob-scripts
@ -503,7 +518,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
(base32 "066z5lw5vrfayhv23hpfcm6fh6b7zmn2v13kfv1g3z3jl1wblhfh")))
(define-public linux-libre-6.5-pristine-source
(let ((version linux-libre-6.5-version)
(hash (base32 "12sswml8jvabv6bqx35lg3jj6gq8jjk365rghjngdy5d0j34jpx1")))
(hash (base32 "06dmb4hbwrms0lp4axphwgj8wbnzsym70sx55lxr501b53wlmqif")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-6.5)))
@ -511,7 +526,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
;; The "longterm" kernels — the older releases with long-term upstream support.
;; Here are the support timelines:
;; <https://www.kernel.org/category/releases.html>
(define-public linux-libre-6.1-version "6.1.61")
(define-public linux-libre-6.1-version "6.1.62")
(define-public linux-libre-6.1-gnu-revision "gnu")
(define deblob-scripts-6.1
(linux-libre-deblob-scripts
@ -521,12 +536,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
(base32 "1hdibv43xbn1lv83i6qjgfmf1bvqxvq17fryfsq4r4sjgs9212js")))
(define-public linux-libre-6.1-pristine-source
(let ((version linux-libre-6.1-version)
(hash (base32 "1kk4d7ph6pvgdrdmaklg15wf58nw9n7yqgkag7jdvqinzh99sb5d")))
(hash (base32 "1v453q4sf0j8708ivs1zmdf645hgimqvxfc8xz7czgnnmipn3zdr")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-6.1)))
(define-public linux-libre-5.15-version "5.15.137")
(define-public linux-libre-5.15-version "5.15.138")
(define-public linux-libre-5.15-gnu-revision "gnu")
(define deblob-scripts-5.15
(linux-libre-deblob-scripts
@ -536,12 +551,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
(base32 "1idjrn2w8jrixj8ifkk1awxyyq5042nc4p2mld4rda96azlnp948")))
(define-public linux-libre-5.15-pristine-source
(let ((version linux-libre-5.15-version)
(hash (base32 "1xxjbxldrhmnh2q6rykpxyfbj8xqgl82q30n8sfavrzr14bb4jcp")))
(hash (base32 "1ajaxy97gx0c9cdxiyxa49ykfsykir22i9abfrcizh71ci0yb15g")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-5.15)))
(define-public linux-libre-5.10-version "5.10.199")
(define-public linux-libre-5.10-version "5.10.200")
(define-public linux-libre-5.10-gnu-revision "gnu1")
(define deblob-scripts-5.10
(linux-libre-deblob-scripts
@ -551,12 +566,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
(base32 "0xrrnmb5kcc5r21bdm24aq0fnkk1imn367c1cxlj78b6l6gigx4b")))
(define-public linux-libre-5.10-pristine-source
(let ((version linux-libre-5.10-version)
(hash (base32 "1h944syk7n6c4j1djlx19n77alzwbxcdza77c9ykicgfynhpgsm0")))
(hash (base32 "012i41bj8rcqn0vhfxrwq3gg82nb6pp2cwq8n146wj47pwgrcbcx")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-5.10)))
(define-public linux-libre-5.4-version "5.4.259")
(define-public linux-libre-5.4-version "5.4.260")
(define-public linux-libre-5.4-gnu-revision "gnu1")
(define deblob-scripts-5.4
(linux-libre-deblob-scripts
@ -566,27 +581,27 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
(base32 "0sw67b2pk3lng4y67diqqnhxaggnp3nbkx8dxc5fs27rinfxr4m1")))
(define-public linux-libre-5.4-pristine-source
(let ((version linux-libre-5.4-version)
(hash (base32 "195v4fidavzm637glj6580006mrcaygnbj4za874imb62bxf9rpz")))
(hash (base32 "1zpbaipd2j3idj8h9iznlj0ywcq5nkhwj707a1f9ixf82h3q4c4q")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-5.4)))
(define-public linux-libre-4.19-version "4.19.297")
(define-public linux-libre-4.19-version "4.19.298")
(define-public linux-libre-4.19-gnu-revision "gnu1")
(define deblob-scripts-4.19
(linux-libre-deblob-scripts
linux-libre-4.19-version
linux-libre-4.19-gnu-revision
(base32 "0ghdizzs6969872rnjcv9p6sl9rcbs29v3ismk125yyvjaczd428")
(base32 "0pjal2cc2f99cvw8r4icb4l24j41k48jkj6bqk7pcahzcgx33ycb")
(base32 "1425mhkfxn18vxn05bb4h3li7x1jl7l1hf1zi8xhnqv3wa31h9wl")))
(define-public linux-libre-4.19-pristine-source
(let ((version linux-libre-4.19-version)
(hash (base32 "0c9xxqgv2i36hrr06dwz7f3idc04xpv0a5pxg08xdh03cnyf12cx")))
(hash (base32 "0mhgq6hdcls1af7nj999x1mds5b37s7vwin8nsb4q0lnx2y1da4x")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-4.19)))
(define-public linux-libre-4.14-version "4.14.328")
(define-public linux-libre-4.14-version "4.14.329")
(define-public linux-libre-4.14-gnu-revision "gnu1")
(define deblob-scripts-4.14
(linux-libre-deblob-scripts
@ -596,7 +611,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
(base32 "1faagsj4i31z2bp83hflx3q9vrddjnn37a3ah2b47iaplva7z1nd")))
(define-public linux-libre-4.14-pristine-source
(let ((version linux-libre-4.14-version)
(hash (base32 "1igcpvnhwwrczfdsafmszvi0456k7f6j4cgpfw6v6afw09p95d8x")))
(hash (base32 "1dvb4xf0b7snabznl7bg7gga7ffdmywy8vr8q65pzl9yf6fnhdny")))
(make-linux-libre-source version
(%upstream-linux-source version hash)
deblob-scripts-4.14)))
@ -629,6 +644,11 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
(patches (append (origin-patches source)
patches))))
(define-public linux-libre-6.6-source
(source-with-patches linux-libre-6.6-pristine-source
(list %boot-logo-patch
%linux-libre-arm-export-__sync_icache_dcache-patch)))
(define-public linux-libre-6.5-source
(source-with-patches linux-libre-6.5-pristine-source
(list %boot-logo-patch
@ -748,6 +768,11 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
(description "Headers of the Linux-Libre kernel.")
(license license:gpl2)))
(define-public linux-libre-headers-6.6
(make-linux-libre-headers* linux-libre-6.6-version
linux-libre-6.6-gnu-revision
linux-libre-6.6-source))
(define-public linux-libre-headers-6.5
(make-linux-libre-headers* linux-libre-6.5-version
linux-libre-6.5-gnu-revision
@ -1092,6 +1117,14 @@ Linux kernel. It has been modified to remove all non-free binary blobs.")
;;; Generic kernel packages.
;;;
(define-public linux-libre-6.6
(make-linux-libre* linux-libre-6.6-version
linux-libre-6.6-gnu-revision
linux-libre-6.6-source
'("x86_64-linux" "i686-linux" "armhf-linux"
"aarch64-linux" "powerpc64le-linux" "riscv64-linux")
#:configuration-file kernel-config))
(define-public linux-libre-6.5
(make-linux-libre* linux-libre-6.5-version
linux-libre-6.5-gnu-revision

147
gnu/packages/llvm.scm
View File

@ -26,6 +26,7 @@
;;; Copyright © 2022 John Kehayias <john.kehayias@protonmail.com>
;;; Copyright © 2022 Clément Lassieur <clement@lassieur.org>
;;; Copyright © 2022 Zhu Zihao <all_but_last@163.com>
;;; Copyright © 2023 Hilton Chain <hako@ultrarare.space>
;;;
;;; This file is part of GNU Guix.
;;;
@ -139,9 +140,19 @@ as \"x86_64-linux\"."
(patches (map search-patch patches)))
(llvm-monorepo (package-version llvm))))
(build-system cmake-build-system)
(native-inputs (package-native-inputs llvm))
(native-inputs
(if (version>=? version "15")
;; TODO: Remove this when GCC 12 is the default.
;; libfuzzer fails to build with GCC 11
(modify-inputs (package-native-inputs llvm)
(prepend gcc-12))
(package-native-inputs llvm)))
(inputs
(list llvm))
(append
(list llvm)
(if (version>=? version "15")
(list libffi)
'())))
(arguments
`(;; Don't use '-g' during the build to save space.
#:build-type "Release"
@ -150,6 +161,11 @@ as \"x86_64-linux\"."
(ice-9 match)
,@%cmake-build-system-modules)
#:phases (modify-phases (@ (guix build cmake-build-system) %standard-phases)
,@(if hash
'()
'((add-after 'unpack 'change-directory
(lambda _
(chdir "compiler-rt")))))
(add-after 'set-paths 'hide-glibc
;; Work around https://issues.guix.info/issue/36882. We need to
;; remove glibc from CPLUS_INCLUDE_PATH so that the one hardcoded
@ -342,6 +358,15 @@ until LLVM/Clang 14."
(("@GLIBC_LIBDIR@")
(string-append libc "/lib"))))))
#t)))
,@(if (version>=? version "17")
'((add-after 'unpack 'include-test-runner
(lambda _
(substitute* "CMakeLists.txt"
((".*llvm_gtest" line)
(string-append
"add_subdirectory(${LLVM_THIRD_PARTY_DIR}/uni\
ttest third-party/unittest)\n" line))))))
'())
;; Awkwardly, multiple phases added after the same phase,
;; e.g. unpack, get applied in the reverse order. In other
;; words, adding 'change-directory last means it occurs
@ -574,11 +599,15 @@ output), and Binutils.")
(define %llvm-monorepo-hashes
'(("14.0.6" . "14f8nlvnmdkp9a9a79wv67jbmafvabczhah8rwnqrgd5g3hfxxxx")
("15.0.7" . "12sggw15sxq1krh1mfk3c1f07h895jlxbcifpwk3pznh4m1rjfy2")))
("15.0.7" . "12sggw15sxq1krh1mfk3c1f07h895jlxbcifpwk3pznh4m1rjfy2")
("16.0.6" . "0jxmapg7shwkl88m4mqgfjv4ziqdmnppxhjz6vz51ycp2x4nmjky")
("17.0.3" . "1fhrnsv87if7kbqmrsxy2r7ykx3gnr9lmbmvkhvycc91ii4ihybx")))
(define %llvm-patches
'(("14.0.6" . ("clang-14.0-libc-search-path.patch"))
("15.0.7" . ("clang-15.0-libc-search-path.patch"))))
("15.0.7" . ("clang-15.0-libc-search-path.patch"))
("16.0.6" . ("clang-16.0-libc-search-path.patch"))
("17.0.3" . ("clang-17.0-libc-search-path.patch"))))
(define (llvm-monorepo version)
(origin
@ -703,34 +732,10 @@ of programming tools as well as libraries with equivalent functionality.")
("perl" ,perl)))))
(define-public clang-runtime-15
(let ((template (clang-runtime-from-llvm llvm-15)))
(package
(inherit template)
(arguments
(substitute-keyword-arguments (package-arguments template)
((#:phases phases '(@ (guix build cmake-build-system) %standard-phases))
#~(modify-phases #$phases
(add-after 'unpack 'change-directory
(lambda _
(chdir "compiler-rt")))))))
(native-inputs
(modify-inputs (package-native-inputs template)
(prepend gcc-12))) ;libfuzzer fails to build with GCC 11
(inputs
(modify-inputs (package-inputs template)
(append libffi))))))
(clang-runtime-from-llvm llvm-15))
(define-public clang-runtime-14
(let ((template (clang-runtime-from-llvm llvm-14)))
(package
(inherit template)
(arguments
(substitute-keyword-arguments (package-arguments template)
((#:phases phases '(@ (guix build cmake-build-system) %standard-phases))
#~(modify-phases #$phases
(add-after 'unpack 'change-directory
(lambda _
(chdir "compiler-rt"))))))))))
(clang-runtime-from-llvm llvm-14))
(define-public clang-15
(clang-from-llvm
@ -1458,6 +1463,74 @@ Library.")
#:legacy-build-shared-libs? #t
#:patches '("clang-3.5-libc-search-path.patch")))
(define-public llvm-16
(package
(inherit llvm-15)
(version "16.0.6")
(source (llvm-monorepo version))))
(define-public clang-runtime-16
(clang-runtime-from-llvm llvm-16))
(define-public clang-16
(clang-from-llvm
llvm-16 clang-runtime-16
#:tools-extra
(origin
(method url-fetch)
(uri (llvm-uri "clang-tools-extra"
(package-version llvm-16)))
(sha256
(base32
"0cbgffciql06a1i0ybyyqbnkkr4g7x8cxaar5a5v3415vd27hk0p")))))
(define-public libomp-16
(package
(inherit libomp-15)
(version (package-version llvm-16))
(source (llvm-monorepo version))
(native-inputs
(modify-inputs (package-native-inputs libomp-15)
(replace "clang" clang-16)
(replace "llvm" llvm-16)))))
(define-public clang-toolchain-16
(make-clang-toolchain clang-16 libomp-16))
(define-public llvm-17
(package
(inherit llvm-15)
(version "17.0.3")
(source (llvm-monorepo version))))
(define-public clang-runtime-17
(clang-runtime-from-llvm llvm-17))
(define-public clang-17
(clang-from-llvm
llvm-17 clang-runtime-17
#:tools-extra
(origin
(method url-fetch)
(uri (llvm-uri "clang-tools-extra"
(package-version llvm-17)))
(sha256
(base32
"0an16xdc8rgrdf0dcq3sdg82ajyb00h4bff9n0gm7gqf48ds0da8")))))
(define-public libomp-17
(package
(inherit libomp-15)
(version (package-version llvm-17))
(source (llvm-monorepo version))
(native-inputs
(modify-inputs (package-native-inputs libomp-15)
(replace "clang" clang-17)
(replace "llvm" llvm-17)))))
(define-public clang-toolchain-17
(make-clang-toolchain clang-17 libomp-17))
;; Default LLVM and Clang version.
(define-public libomp libomp-13)
(define-public llvm llvm-13)
@ -1602,6 +1675,20 @@ components which highly leverage existing libraries in the larger LLVM Project."
(inputs (modify-inputs (package-inputs lld)
(replace "llvm" llvm-11)))))
(define-public lld-16
(package
(inherit lld-15)
(version (package-version llvm-16))
(source (llvm-monorepo version))
(inputs (list llvm-16))))
(define-public lld-17
(package
(inherit lld-15)
(version (package-version llvm-17))
(source (llvm-monorepo version))
(inputs (list llvm-17))))
(define-public lld lld-14)
(define* (make-lld-wrapper lld #:key lld-as-ld?)

21
gnu/packages/networking.scm
View File

@ -4398,6 +4398,27 @@ client and server. It allows you to use remote block devices over a TCP/IP
network.")
(license license:gpl2)))
(define-public ngtcp2
(package
(name "ngtcp2")
(version "1.0.1")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/ngtcp2/ngtcp2/"
"releases/download/v" version "/"
"ngtcp2-" version ".tar.xz"))
(sha256
(base32 "0l84hnj9n4bfxjizgmqsqbz71jx7m00a7l1z43fg5ls3apx9ij11"))))
(build-system gnu-build-system)
(native-inputs (list cunit))
(home-page "https://nghttp2.org/ngtcp2/")
(synopsis "QUIC protocol implementation")
(description
"The ngtcp2 project is an effort to implement the RFC9000 (IETF)
QUIC protocol.")
(license license:expat)))
(define-public yggdrasil
(package
(name "yggdrasil")

6
gnu/packages/package-management.scm
View File

@ -1754,8 +1754,8 @@ in an isolated environment, in separate namespaces.")
(license license:gpl3+)))
(define-public nar-herder
(let ((commit "53682fac7e00cd2801406edbd014922c1720c347")
(revision "21"))
(let ((commit "bf539aa08edfe8010606a31c00e0296c3d400319")
(revision "22"))
(package
(name "nar-herder")
(version (git-version "0" revision commit))
@ -1766,7 +1766,7 @@ in an isolated environment, in separate namespaces.")
(commit commit)))
(sha256
(base32
"18mzrpc5ni8d6xbp1bg0nzdj0brmnji4jm1gyiq77dm17c118zyz"))
"1i9q7ys26r6y2xa4qqy21bcxlqiynxp3p1wl5gmyj33jnb9ryjby"))
(file-name (string-append name "-" version "-checkout"))))
(build-system gnu-build-system)
(arguments

28
gnu/packages/patches/agda-categories-use-stdlib-1.7.3.patch 100644
View File

@ -0,0 +1,28 @@
From 76d3863a5e6e7b9ee948f10a3faec3420a2020f1 Mon Sep 17 00:00:00 2001
Message-ID: <76d3863a5e6e7b9ee948f10a3faec3420a2020f1.1698265016.git.dev@jpoiret.xyz>
From: Josselin Poiret <dev@jpoiret.xyz>
Date: Wed, 25 Oct 2023 22:15:43 +0200
Subject: [PATCH] Bump stdlib to 1.7.3
From: Josselin Poiret <dev@jpoiret.xyz>
---
agda-categories.agda-lib | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/agda-categories.agda-lib b/agda-categories.agda-lib
index 5b19c405..4d63d415 100644
--- a/agda-categories.agda-lib
+++ b/agda-categories.agda-lib
@@ -1,3 +1,3 @@
name: agda-categories
-depend: standard-library-1.7.2
+depend: standard-library-1.7.3
include: src/
base-commit: 9d61106740147a67fa2cae0a89ac066897b24a51
prerequisite-patch-id: 508dabd923ba9ac1ee4d8dab6697432b4bd8ba18
prerequisite-patch-id: b5f39b4fc9e4c9993ab31300de041ed2c7eb696b
--
2.41.0

51
gnu/packages/patches/agda-use-sphinx-5.patch 100644
View File

@ -0,0 +1,51 @@
From 99ed1b59ef73fd35053810f6a09e034e1513caee Mon Sep 17 00:00:00 2001
Message-ID: <99ed1b59ef73fd35053810f6a09e034e1513caee.1698243851.git.dev@jpoiret.xyz>
From: Josselin Poiret <dev@jpoiret.xyz>
Date: Wed, 25 Oct 2023 16:23:32 +0200
Subject: [PATCH] Revert "Docs: bump Sphinx to 6.0.0"
From: Josselin Poiret <dev@jpoiret.xyz>
This reverts commit 40dd42eaa7c04e134fa38cb4f958414a76df27a7.
---
doc/user-manual/conf.py | 5 ++---
doc/user-manual/requirements.txt | 4 ++--
2 files changed, 4 insertions(+), 5 deletions(-)
diff --git a/doc/user-manual/conf.py b/doc/user-manual/conf.py
index 127f6582dc..d737ede19b 100644
--- a/doc/user-manual/conf.py
+++ b/doc/user-manual/conf.py
@@ -35,7 +35,7 @@ release = version
#
# If your change the version here also change it in the
# `requirements.txt` file [Issue #1936].
-needs_sphinx = '6.0.0'
+needs_sphinx = '5.0.0'
# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
@@ -43,8 +43,7 @@ needs_sphinx = '6.0.0'
extensions = [
'sphinx.ext.imgmath',
'sphinx.ext.ifconfig',
- 'sphinx.ext.imgconverter',
- 'sphinxcontrib.jquery'
+ 'sphinx.ext.imgconverter'
]
# Add any paths that contain templates here, relative to this directory.
diff --git a/doc/user-manual/requirements.txt b/doc/user-manual/requirements.txt
index 384b1466b4..656e6c9ac0 100644
--- a/doc/user-manual/requirements.txt
+++ b/doc/user-manual/requirements.txt
@@ -1,2 +1,2 @@
-Sphinx >= 7.2.5
-sphinx_rtd_theme >= 1.3.0
+Sphinx >= 5.0.0, != 5.2.0.post0
+sphinx_rtd_theme >= 1.0
base-commit: 08b79a684d712ba3dc4b26e5052ec49f49f5ff6c
--
2.41.0

95
gnu/packages/patches/clang-16.0-libc-search-path.patch 100644
View File

@ -0,0 +1,95 @@
Clang attempts to guess file names based on the OS and distro (yes!),
but unfortunately, that doesn't work for us.
This patch makes it easy to insert libc's $libdir so that Clang passes the
correct absolute file name of crt1.o etc. to 'ld'. It also disables all
the distro-specific stuff and removes the hard-coded FHS directory names
to make sure Clang also works on foreign distros.
diff --git a/clang/lib/Driver/Distro.cpp b/clang/lib/Driver/Distro.cpp
index 87a0c5a58511..86ea82eda4b5 100644
--- a/clang/lib/Driver/Distro.cpp
+++ b/clang/lib/Driver/Distro.cpp
@@ -98,6 +98,10 @@ static Distro::DistroType DetectLsbRelease(llvm::vfs::FileSystem &VFS) {
}
static Distro::DistroType DetectDistro(llvm::vfs::FileSystem &VFS) {
+ // The compiler should always behave the same, even when used via Guix on a
+ // foreign distro.
+ return Distro::UnknownDistro;
+
Distro::DistroType Version = Distro::UnknownDistro;
// Newer freedesktop.org's compilant systemd-based systems
diff --git a/clang/lib/Driver/ToolChains/Cuda.cpp b/clang/lib/Driver/ToolChains/Cuda.cpp
index aa125bb308e8..8b86e144054c 100644
--- a/clang/lib/Driver/ToolChains/Cuda.cpp
+++ b/clang/lib/Driver/ToolChains/Cuda.cpp
@@ -124,6 +124,9 @@ CudaInstallationDetector::CudaInstallationDetector(
const Driver &D, const llvm::Triple &HostTriple,
const llvm::opt::ArgList &Args)
: D(D) {
+ // Don't look for CUDA in /usr.
+ return;
+
struct Candidate {
std::string Path;
bool StrictChecking;
diff --git a/clang/lib/Driver/ToolChains/Linux.cpp b/clang/lib/Driver/ToolChains/Linux.cpp
index c6fb290ffdb4..4736f4bb3392 100644
--- a/clang/lib/Driver/ToolChains/Linux.cpp
+++ b/clang/lib/Driver/ToolChains/Linux.cpp
@@ -189,6 +189,10 @@ Linux::Linux(const Driver &D, const llvm::Triple &Triple, const ArgList &Args)
Generic_GCC::PushPPaths(PPaths);
+ // Comment out the distro-specific tweaks so that they don't bite when
+ // using Guix on a foreign distro.
+#if 0
+
Distro Distro(D.getVFS(), Triple);
if (Distro.IsAlpineLinux() || Triple.isAndroid()) {
@@ -249,6 +253,7 @@ Linux::Linux(const Driver &D, const llvm::Triple &Triple, const ArgList &Args)
#ifdef ENABLE_LINKER_BUILD_ID
ExtraOpts.push_back("--build-id");
+#endif
#endif
// The selection of paths to try here is designed to match the patterns which
@@ -270,6 +275,7 @@ Linux::Linux(const Driver &D, const llvm::Triple &Triple, const ArgList &Args)
}
Generic_GCC::AddMultilibPaths(D, SysRoot, OSLibDir, MultiarchTriple, Paths);
+#if 0
addPathIfExists(D, concat(SysRoot, "/lib", MultiarchTriple), Paths);
addPathIfExists(D, concat(SysRoot, "/lib/..", OSLibDir), Paths);
@@ -298,9 +304,11 @@ Linux::Linux(const Driver &D, const llvm::Triple &Triple, const ArgList &Args)
addPathIfExists(D, concat(SysRoot, "/", OSLibDir, ABIName), Paths);
addPathIfExists(D, concat(SysRoot, "/usr", OSLibDir, ABIName), Paths);
}
+#endif
Generic_GCC::AddMultiarchPaths(D, SysRoot, OSLibDir, Paths);
+#if 0
// The deprecated -DLLVM_ENABLE_PROJECTS=libcxx configuration installs
// libc++.so in D.Dir+"/../lib/". Detect this path.
// TODO Remove once LLVM_ENABLE_PROJECTS=libcxx is unsupported.
@@ -310,6 +318,14 @@ Linux::Linux(const Driver &D, const llvm::Triple &Triple, const ArgList &Args)
addPathIfExists(D, concat(SysRoot, "/lib"), Paths);
addPathIfExists(D, concat(SysRoot, "/usr/lib"), Paths);
+#endif
+
+ // Add libc's lib/ directory to the search path, so that crt1.o, crti.o,
+ // and friends can be found.
+ addPathIfExists(D, "@GLIBC_LIBDIR@", Paths);
+
+ // Add GCC's lib/ directory so libstdc++.so can be found.
+ addPathIfExists(D, GCCInstallation.getParentLibPath(), Paths);
}
ToolChain::RuntimeLibType Linux::GetDefaultRuntimeLibType() const {

90
gnu/packages/patches/clang-17.0-libc-search-path.patch 100644
View File

@ -0,0 +1,90 @@
Clang attempts to guess file names based on the OS and distro (yes!),
but unfortunately, that doesn't work for us.
This patch makes it easy to insert libc's $libdir so that Clang passes the
correct absolute file name of crt1.o etc. to 'ld'. It also disables all
the distro-specific stuff and removes the hard-coded FHS directory names
to make sure Clang also works on foreign distros.
diff --git a/clang/lib/Driver/Distro.cpp b/clang/lib/Driver/Distro.cpp
index 6e0087565941..c0a3ba7d7702 100644
--- a/clang/lib/Driver/Distro.cpp
+++ b/clang/lib/Driver/Distro.cpp
@@ -99,6 +99,10 @@ static Distro::DistroType DetectLsbRelease(llvm::vfs::FileSystem &VFS) {
}
static Distro::DistroType DetectDistro(llvm::vfs::FileSystem &VFS) {
+ // The compiler should always behave the same, even when used via Guix on a
+ // foreign distro.
+ return Distro::UnknownDistro;
+
Distro::DistroType Version = Distro::UnknownDistro;
// Newer freedesktop.org's compilant systemd-based systems
diff --git a/clang/lib/Driver/ToolChains/Cuda.cpp b/clang/lib/Driver/ToolChains/Cuda.cpp
index 3a577650eb08..ca3373edc127 100644
--- a/clang/lib/Driver/ToolChains/Cuda.cpp
+++ b/clang/lib/Driver/ToolChains/Cuda.cpp
@@ -128,6 +128,9 @@ CudaInstallationDetector::CudaInstallationDetector(
const Driver &D, const llvm::Triple &HostTriple,
const llvm::opt::ArgList &Args)
: D(D) {
+ // Don't look for CUDA in /usr.
+ return;
+
struct Candidate {
std::string Path;
bool StrictChecking;
diff --git a/clang/lib/Driver/ToolChains/Linux.cpp b/clang/lib/Driver/ToolChains/Linux.cpp
index 1ba222bf83b1..28766c5ab792 100644
--- a/clang/lib/Driver/ToolChains/Linux.cpp
+++ b/clang/lib/Driver/ToolChains/Linux.cpp
@@ -220,6 +220,10 @@ Linux::Linux(const Driver &D, const llvm::Triple &Triple, const ArgList &Args)
Generic_GCC::PushPPaths(PPaths);
+ // Comment out the distro-specific tweaks so that they don't bite when
+ // using Guix on a foreign distro.
+#if 0
+
Distro Distro(D.getVFS(), Triple);
if (Distro.IsAlpineLinux() || Triple.isAndroid()) {
@@ -280,6 +284,7 @@ Linux::Linux(const Driver &D, const llvm::Triple &Triple, const ArgList &Args)
#ifdef ENABLE_LINKER_BUILD_ID
ExtraOpts.push_back("--build-id");
+#endif
#endif
// The selection of paths to try here is designed to match the patterns which
@@ -301,6 +306,7 @@ Linux::Linux(const Driver &D, const llvm::Triple &Triple, const ArgList &Args)
}
Generic_GCC::AddMultilibPaths(D, SysRoot, OSLibDir, MultiarchTriple, Paths);
+#if 0
addPathIfExists(D, concat(SysRoot, "/lib", MultiarchTriple), Paths);
addPathIfExists(D, concat(SysRoot, "/lib/..", OSLibDir), Paths);
@@ -329,11 +335,21 @@ Linux::Linux(const Driver &D, const llvm::Triple &Triple, const ArgList &Args)
addPathIfExists(D, concat(SysRoot, "/", OSLibDir, ABIName), Paths);
addPathIfExists(D, concat(SysRoot, "/usr", OSLibDir, ABIName), Paths);
}
+#endif
Generic_GCC::AddMultiarchPaths(D, SysRoot, OSLibDir, Paths);
+#if 0
addPathIfExists(D, concat(SysRoot, "/lib"), Paths);
addPathIfExists(D, concat(SysRoot, "/usr/lib"), Paths);
+#endif
+
+ // Add libc's lib/ directory to the search path, so that crt1.o, crti.o,
+ // and friends can be found.
+ addPathIfExists(D, "@GLIBC_LIBDIR@", Paths);
+
+ // Add GCC's lib/ directory so libstdc++.so can be found.
+ addPathIfExists(D, GCCInstallation.getParentLibPath(), Paths);
}
ToolChain::RuntimeLibType Linux::GetDefaultRuntimeLibType() const {

25
gnu/packages/ruby.scm
View File

@ -34,6 +34,7 @@
;;; Copyright © 2023 Yovan Naumovski <yovan@gorski.stream>
;;; Copyright © 2023 gemmaro <gemmaro.dev@gmail.com>
;;; Copyright © 2023 Janneke Nieuwenhuizen <janneke@gnu.org>
;;; Copyright © 2023 Zheng Junjie <873216071@qq.com>
;;;
;;; This file is part of GNU Guix.
;;;
@ -129,7 +130,13 @@
(build-system gnu-build-system)
(arguments
`(#:test-target "test"
#:configure-flags '("--enable-shared") ; dynamic linking
#:configure-flags
,(if (%current-target-system)
'(list (string-append
"LDFLAGS=-Wl,-rpath="
(assoc-ref %outputs "out") "/lib")
"--enable-shared")
''("--enable-shared")) ; dynamic linking
#:phases
(modify-phases %standard-phases
(add-before 'configure 'replace-bin-sh-and-remove-libffi
@ -147,6 +154,9 @@
"tool/rbinstall.rb")
(("/bin/sh") (which "sh")))
#t)))))
(native-inputs (if (%current-target-system)
(list this-package)
'()))
(inputs
(list readline openssl-1.1 libffi gdbm))
(propagated-inputs
@ -177,7 +187,13 @@ a focus on simplicity and productivity.")
"042xrdk7hsv4072bayz3f8ffqh61i8zlhvck10nfshllq063n877"))))
(arguments
`(#:test-target "test"
#:configure-flags '("--enable-shared") ; dynamic linking
#:configure-flags
,(if (%current-target-system)
'(list (string-append
"LDFLAGS=-Wl,-rpath="
(assoc-ref %outputs "out") "/lib")
"--enable-shared")
''("--enable-shared")) ; dynamic linking
#:phases
(modify-phases %standard-phases
(add-before 'configure 'replace-bin-sh-and-remove-libffi
@ -204,7 +220,10 @@ a focus on simplicity and productivity.")
(delete-file "test/ruby/test_io.rb"))))
'()))))
(native-inputs
(list autoconf))))
(append (if (%current-target-system)
(list this-package)
'())
(list autoconf)))))
(define ruby-2.7-fixed
(package

12
gnu/packages/video.scm
View File

@ -1783,14 +1783,14 @@ audio/video codec library.")
(define-public ffmpeg-5
(package
(inherit ffmpeg)
(version "5.1.3")
(version "5.1.4")
(source (origin
(method url-fetch)
(uri (string-append "https://ffmpeg.org/releases/ffmpeg-"
version ".tar.xz"))
(sha256
(base32
"0biil32xnshg1b4lwzbdc5rxv1g7lpfsr5gdgaz96wlhzy9ka48v"))))))
"0qwhyhil805hns7yksdxagnrcc90h60al7lz1rc65kd1j2w3nf2l"))))))
(define-public ffmpeg-4
(package
@ -1813,14 +1813,14 @@ audio/video codec library.")
(define-public ffmpeg-3.4
(package
(inherit ffmpeg-4)
(version "3.4.11")
(version "3.4.13")
(source (origin
(method url-fetch)
(uri (string-append "https://ffmpeg.org/releases/ffmpeg-"
version ".tar.xz"))
(sha256
(base32
"1rijdvcx8xjqwh084qchwz91vcj8wsvb4diax0g8miywpir00ccw"))))
"0np0yalqdrm7rn7iykgfzz3ly4vbgigrajg48c1l6n7qrzqvfszv"))))
(arguments
(substitute-keyword-arguments (package-arguments ffmpeg-4)
((#:modules modules %gnu-build-system-modules)
@ -1838,14 +1838,14 @@ audio/video codec library.")
(define-public ffmpeg-2.8
(package
(inherit ffmpeg-3.4)
(version "2.8.20")
(version "2.8.22")
(source (origin
(method url-fetch)
(uri (string-append "https://ffmpeg.org/releases/ffmpeg-"
version ".tar.xz"))
(sha256
(base32
"1ivnfqmfnp3zmn1q2dxy4p85427y3r6d3jbnl5kprr7lqckf6rl5"))))
"0c8m4hhv2k5fybha908wzrpnf3wqkq52hayl658jq4bah0igdfqz"))))
(arguments
`(#:tests? #f ; XXX: Enable them later, if required
#:configure-flags

10
gnu/packages/web.scm
View File

@ -1004,7 +1004,7 @@ similar to live activity monitoring provided with NGINX plus.")
(define-public lighttpd
(package
(name "lighttpd")
(version "1.4.72")
(version "1.4.73")
(source (origin
(method url-fetch)
(uri (string-append "https://download.lighttpd.net/lighttpd/"
@ -1012,7 +1012,7 @@ similar to live activity monitoring provided with NGINX plus.")
"lighttpd-" version ".tar.xz"))
(sha256
(base32
"1v2m9vavrg3ibbl0kfq3rjlnqicbrlrkqih1iisa0m5pd56xxjpp"))))
"1a2cx3di07wf8qii7dpk4yr5wvaz8c9na1x7523smc0lng81d241"))))
(build-system gnu-build-system)
(arguments
(list #:configure-flags
@ -4955,8 +4955,8 @@ Cloud.")
(license license:expat)))
(define-public guix-data-service
(let ((commit "1c7539418743e0dfe3a9cad22c414fd732daef8f")
(revision "42"))
(let ((commit "37a07c2d6e8285877ad0440a7e4ae286b7b65177")
(revision "43"))
(package
(name "guix-data-service")
(version (string-append "0.0.1-" revision "." (string-take commit 7)))
@ -4968,7 +4968,7 @@ Cloud.")
(file-name (git-file-name name version))
(sha256
(base32
"1gp4mhjssxky0jjjz916rfgz4w2f327wfd5ixb6lb00ydlfh5mws"))))
"0h83j10bq7dyda2idbqh5y6dcvmbl3xgc147yq4pk6bkh10y29y6"))))
(build-system gnu-build-system)
(arguments
(list