gnu: r-annotationhub: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-annotationhub): Move from here... * gnu/packages/bioconductor.scm (r-annotationhub): ...to here.master
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@ -1987,6 +1987,47 @@ annotation data packages using SQLite data storage.")
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databases. Packages produced are intended to be used with AnnotationDbi.")
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databases. Packages produced are intended to be used with AnnotationDbi.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-annotationhub
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(package
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(name "r-annotationhub")
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(version "2.22.1")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "AnnotationHub" version))
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(sha256
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(base32
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"08d7m0n4jkpajsj0bvi5xd4vi1zqczl6lnrh8kqi2fbjkrvwdqp5"))))
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(properties `((upstream-name . "AnnotationHub")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-biocfilecache" ,r-biocfilecache)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biocmanager" ,r-biocmanager)
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("r-biocversion" ,r-biocversion)
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("r-curl" ,r-curl)
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("r-dplyr" ,r-dplyr)
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("r-httr" ,r-httr)
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("r-interactivedisplaybase" ,r-interactivedisplaybase)
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("r-rappdirs" ,r-rappdirs)
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("r-rsqlite" ,r-rsqlite)
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("r-s4vectors" ,r-s4vectors)
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("r-yaml" ,r-yaml)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/AnnotationHub")
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(synopsis "Client to access AnnotationHub resources")
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(description
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"This package provides a client for the Bioconductor AnnotationHub web
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resource. The AnnotationHub web resource provides a central location where
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genomic files (e.g. VCF, bed, wig) and other resources from standard
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locations (e.g. UCSC, Ensembl) can be discovered. The resource includes
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metadata about each resource, e.g., a textual description, tags, and date of
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modification. The client creates and manages a local cache of files retrieved
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by the user, helping with quick and reproducible access.")
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(license license:artistic2.0)))
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(define-public r-aroma-light
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(define-public r-aroma-light
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(package
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(package
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(name "r-aroma-light")
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(name "r-aroma-light")
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@ -9196,47 +9196,6 @@ their variance is independent of the mean, and they are usually more sensitive
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and specific in detecting differential transcription.")
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and specific in detecting differential transcription.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-annotationhub
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(package
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(name "r-annotationhub")
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(version "2.22.1")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "AnnotationHub" version))
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(sha256
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(base32
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"08d7m0n4jkpajsj0bvi5xd4vi1zqczl6lnrh8kqi2fbjkrvwdqp5"))))
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(properties `((upstream-name . "AnnotationHub")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-biocfilecache" ,r-biocfilecache)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biocmanager" ,r-biocmanager)
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("r-biocversion" ,r-biocversion)
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("r-curl" ,r-curl)
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("r-dplyr" ,r-dplyr)
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("r-httr" ,r-httr)
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("r-interactivedisplaybase" ,r-interactivedisplaybase)
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("r-rappdirs" ,r-rappdirs)
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("r-rsqlite" ,r-rsqlite)
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("r-s4vectors" ,r-s4vectors)
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("r-yaml" ,r-yaml)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/AnnotationHub")
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(synopsis "Client to access AnnotationHub resources")
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(description
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"This package provides a client for the Bioconductor AnnotationHub web
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resource. The AnnotationHub web resource provides a central location where
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genomic files (e.g. VCF, bed, wig) and other resources from standard
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locations (e.g. UCSC, Ensembl) can be discovered. The resource includes
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metadata about each resource, e.g., a textual description, tags, and date of
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modification. The client creates and manages a local cache of files retrieved
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by the user, helping with quick and reproducible access.")
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(license license:artistic2.0)))
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(define-public r-fastseg
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(define-public r-fastseg
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(package
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(package
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(name "r-fastseg")
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(name "r-fastseg")
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