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gnu: r-annotationhub: Move to (gnu packages bioconductor). 

* gnu/packages/bioinformatics.scm (r-annotationhub): Move from here...
* gnu/packages/bioconductor.scm (r-annotationhub): ...to here.
master
zimoun 2021-05-21 22:25:52 +02:00 committed by Ricardo Wurmus
parent dfe6224f5f
commit 9644745692
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2 changed files with 41 additions and 41 deletions
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41
gnu/packages/bioconductor.scm
View File

@ -1987,6 +1987,47 @@ annotation data packages using SQLite data storage.")
databases. Packages produced are intended to be used with AnnotationDbi.")
(license license:artistic2.0)))
(define-public r-annotationhub
(package
(name "r-annotationhub")
(version "2.22.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "AnnotationHub" version))
(sha256
(base32
"08d7m0n4jkpajsj0bvi5xd4vi1zqczl6lnrh8kqi2fbjkrvwdqp5"))))
(properties `((upstream-name . "AnnotationHub")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biocfilecache" ,r-biocfilecache)
("r-biocgenerics" ,r-biocgenerics)
("r-biocmanager" ,r-biocmanager)
("r-biocversion" ,r-biocversion)
("r-curl" ,r-curl)
("r-dplyr" ,r-dplyr)
("r-httr" ,r-httr)
("r-interactivedisplaybase" ,r-interactivedisplaybase)
("r-rappdirs" ,r-rappdirs)
("r-rsqlite" ,r-rsqlite)
("r-s4vectors" ,r-s4vectors)
("r-yaml" ,r-yaml)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/AnnotationHub")
(synopsis "Client to access AnnotationHub resources")
(description
"This package provides a client for the Bioconductor AnnotationHub web
resource. The AnnotationHub web resource provides a central location where
genomic files (e.g. VCF, bed, wig) and other resources from standard
locations (e.g. UCSC, Ensembl) can be discovered. The resource includes
metadata about each resource, e.g., a textual description, tags, and date of
modification. The client creates and manages a local cache of files retrieved
by the user, helping with quick and reproducible access.")
(license license:artistic2.0)))
(define-public r-aroma-light
(package
(name "r-aroma-light")

41
gnu/packages/bioinformatics.scm
View File

@ -9196,47 +9196,6 @@ their variance is independent of the mean, and they are usually more sensitive
and specific in detecting differential transcription.")
(license license:artistic2.0)))
(define-public r-annotationhub
(package
(name "r-annotationhub")
(version "2.22.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "AnnotationHub" version))
(sha256
(base32
"08d7m0n4jkpajsj0bvi5xd4vi1zqczl6lnrh8kqi2fbjkrvwdqp5"))))
(properties `((upstream-name . "AnnotationHub")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biocfilecache" ,r-biocfilecache)
("r-biocgenerics" ,r-biocgenerics)
("r-biocmanager" ,r-biocmanager)
("r-biocversion" ,r-biocversion)
("r-curl" ,r-curl)
("r-dplyr" ,r-dplyr)
("r-httr" ,r-httr)
("r-interactivedisplaybase" ,r-interactivedisplaybase)
("r-rappdirs" ,r-rappdirs)
("r-rsqlite" ,r-rsqlite)
("r-s4vectors" ,r-s4vectors)
("r-yaml" ,r-yaml)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/AnnotationHub")
(synopsis "Client to access AnnotationHub resources")
(description
"This package provides a client for the Bioconductor AnnotationHub web
resource. The AnnotationHub web resource provides a central location where
genomic files (e.g. VCF, bed, wig) and other resources from standard
locations (e.g. UCSC, Ensembl) can be discovered. The resource includes
metadata about each resource, e.g., a textual description, tags, and date of
modification. The client creates and manages a local cache of files retrieved
by the user, helping with quick and reproducible access.")
(license license:artistic2.0)))
(define-public r-fastseg
(package
(name "r-fastseg")