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gnu: python-pygenometracks: Update to 3.3.

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* gnu/packages/bioinformatics.scm (python-pygenometracks): Update to 3.3.
[arguments]: Add phase "relax-requirements"; disable tests.
[propagated-inputs]: Remove python-configparser and python-hicexplorer; add
python-gffutils, python-pysam, and python-tqdm.
This commit is contained in:
Ricardo Wurmus 2020-04-17 15:50:29 +02:00
parent d8fce2362b
commit 974bf81776
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GPG key ID: 197A5888235FACAC
1 changed files with 18 additions and 6 deletions
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@ -13773,23 +13773,35 @@ genomic scores), long range contacts and the visualization of viewpoints.")
(define-public python-pygenometracks
(package
(name "python-pygenometracks")
(version "2.0")
(version "3.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyGenomeTracks" version))
(sha256
(base32
"1fws6bqsyy9kj3qiabhkqx4wd4i775gsxnhszqd3zg7w67sc1ic5"))))
"16laa0wnf4qn9fb9ych4w1vqhqwjss70v0y0f6wp4gwqfrlgac0f"))))
(build-system python-build-system)
(arguments
`(#:tests? #f ; there are none
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'relax-requirements
(lambda _
(substitute* "setup.py"
(("matplotlib ==3.1.1")
"matplotlib >=3.1.1"))
#t)))))
(propagated-inputs
`(("python-configparser" ,python-configparser)
("python-future" ,python-future)
("python-hicexplorer" ,python-hicexplorer)
`(("python-future" ,python-future)
("python-gffutils" ,python-gffutils)
("python-hicmatrix" ,python-hicmatrix)
("python-intervaltree" ,python-intervaltree)
("python-matplotlib" ,python-matplotlib)
("python-numpy" ,python-numpy)
("python-pybigwig" ,python-pybigwig)))
("python-pybigwig" ,python-pybigwig)
("python-pysam" ,python-pysam)
("python-tqdm" ,python-tqdm)))
(native-inputs
`(("python-pytest" ,python-pytest)))
(home-page "https://pygenometracks.readthedocs.io")