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gnu: cutadapt: Update to 2.1. 

* gnu/packages/bioinformatics.scm (cutadapt): Update to 2.1.
[source]: Fetch from pypi.
[native-inputs]: Add python-setuptools-scm.
master
Ricardo Wurmus 2019-03-26 16:35:56 +01:00
parent 24d6498972
commit 9ac17c6242
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1 changed files with 6 additions and 8 deletions
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@ -2325,23 +2325,21 @@ files. The code was previously part of the cutadapt tool.")
(define-public cutadapt (define-public cutadapt
(package (package
(name "cutadapt") (name "cutadapt")
(version "1.18") (version "2.1")
(source (origin (source (origin
(method git-fetch) (method url-fetch)
(uri (git-reference (uri (pypi-uri "cutadapt" version))
(url "https://github.com/marcelm/cutadapt.git")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256 (sha256
(base32 (base32
"08bbfwyc0kvcd95jf2s95xiv9s3cbsxm39ydl0qck3fw3cviwxpg")))) "1vqmsfkm6llxzmsz9wcfcvzx9a9f8iabvwik2rbyn7nc4wm25z89"))))
(build-system python-build-system) (build-system python-build-system)
(inputs (inputs
`(("python-dnaio" ,python-dnaio) `(("python-dnaio" ,python-dnaio)
("python-xopen" ,python-xopen))) ("python-xopen" ,python-xopen)))
(native-inputs (native-inputs
`(("python-cython" ,python-cython) `(("python-cython" ,python-cython)
("python-pytest" ,python-pytest))) ("python-pytest" ,python-pytest)
("python-setuptools-scm" ,python-setuptools-scm)))
(home-page "https://cutadapt.readthedocs.io/en/stable/") (home-page "https://cutadapt.readthedocs.io/en/stable/")
(synopsis "Remove adapter sequences from nucleotide sequencing reads") (synopsis "Remove adapter sequences from nucleotide sequencing reads")
(description (description