gnu: Add r-radiogx.
* gnu/packages/bioconductor.scm (r-radiogx): New variable. Change-Id: I8fd06a18bd68f9a3baa2cc129d62aef06528bc97 Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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@ -7847,6 +7847,51 @@ multiple sequence alignments to assess basepair conservation and covariation,
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with numerical methods for computing statistics for each.")
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with numerical methods for computing statistics for each.")
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(license license:gpl3)))
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(license license:gpl3)))
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(define-public r-radiogx
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(package
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(name "r-radiogx")
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(version "2.4.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "RadioGx" version))
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(sha256
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(base32 "18zqfnwjil4mv7fgh4wvnniyybmyqkg0hk2wc57rcn0mlppa3602"))))
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(properties `((upstream-name . "RadioGx")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-assertthat
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r-biobase
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r-biocgenerics
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r-biocparallel
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r-catools
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r-coregx
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r-data-table
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r-downloader
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r-magicaxis
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r-matrixstats
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r-rcolorbrewer
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r-reshape2
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r-s4vectors
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r-scales
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r-summarizedexperiment))
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(native-inputs (list r-knitr))
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(home-page "https://bioconductor.org/packages/RadioGx")
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(synopsis "Analysis of large-scale radio-genomic data")
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(description
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"This package is a computational tool box for radio-genomic analysis
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which integrates radio-response data, radio-biological modelling and
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comprehensive cell line annotations for hundreds of cancer cell lines. The
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@code{RadioSet} class enables creation and manipulation of standardized
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datasets including information about cancer cells lines, radio-response assays
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and dose-response indicators. Included methods allow fitting and plotting
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dose-response data using established radio-biological models along with
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quality control to validate results. Additional functions related to fitting
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and plotting dose response curves, quantifying statistical correlation and
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calculating @acronym{AUC, area under the curve} or @acronym{SF, survival
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fraction} are included.")
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(license license:gpl3)))
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(define-public r-raggedexperiment
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(define-public r-raggedexperiment
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(package
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(package
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(name "r-raggedexperiment")
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(name "r-raggedexperiment")
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