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gnu: r-samr: Move to (gnu packages bioconductor).

* gnu/packages/cran.scm (r-samr): Move from here...
* gnu/packages/bioconductor.scm (r-samr): ...to here.
master
zimoun 2021-05-21 22:25:40 +02:00 committed by Ricardo Wurmus
parent 4f030cc0db
commit a2a1d86a77
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2 changed files with 31 additions and 30 deletions

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@ -10,6 +10,7 @@
;;; Copyright © 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> ;;; Copyright © 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net> ;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de> ;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de>
;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
;;; ;;;
;;; This file is part of GNU Guix. ;;; This file is part of GNU Guix.
;;; ;;;
@ -2809,6 +2810,36 @@ built-in). The user may export/import tracks to/from the supported browsers,
as well as query and modify the browser state, such as the current viewport.") as well as query and modify the browser state, such as the current viewport.")
(license license:artistic2.0))) (license license:artistic2.0)))
;; This is a CRAN package, but it depends on a Bioconductor package.
(define-public r-samr
(package
(name "r-samr")
(version "3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "samr" version))
(sha256
(base32
"01km0f7qgm73x19vbvsxl083hs1dq4dj8qm5h64cxbf20b08my15"))))
(properties `((upstream-name . "samr")))
(build-system r-build-system)
(propagated-inputs
`(("r-gsa" ,r-gsa)
("r-impute" ,r-impute)
("r-matrixstats" ,r-matrixstats)
("r-openxlsx" ,r-openxlsx)
("r-shiny" ,r-shiny)
("r-shinyfiles" ,r-shinyfiles)))
(native-inputs `(("gfortran" ,gfortran)))
(home-page "https://statweb.stanford.edu/~tibs/SAM/")
(synopsis "Significance analysis of Microarrays")
(description
"This is a package for significance analysis of Microarrays for
differential expression analysis, RNAseq data and related problems.")
;; Any version of the LGPL
(license license:lgpl3+)))
(define-public r-shortread (define-public r-shortread
(package (package
(name "r-shortread") (name "r-shortread")

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@ -33,7 +33,6 @@
;;; Copyright © 2020 Magali Lemes <magalilemes00@gmail.com> ;;; Copyright © 2020 Magali Lemes <magalilemes00@gmail.com>
;;; Copyright © 2020 Simon Tournier <zimon.toutoune@gmail.com> ;;; Copyright © 2020 Simon Tournier <zimon.toutoune@gmail.com>
;;; Copyright © 2020 Aniket Patil <aniket112.patil@gmail.com> ;;; Copyright © 2020 Aniket Patil <aniket112.patil@gmail.com>
;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
;;; ;;;
;;; This file is part of GNU Guix. ;;; This file is part of GNU Guix.
;;; ;;;
@ -29153,35 +29152,6 @@ indicator, a quantitative variable or a survival time.")
;; Any version of the LGPL ;; Any version of the LGPL
(license license:lgpl3+))) (license license:lgpl3+)))
(define-public r-samr
(package
(name "r-samr")
(version "3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "samr" version))
(sha256
(base32
"01km0f7qgm73x19vbvsxl083hs1dq4dj8qm5h64cxbf20b08my15"))))
(properties `((upstream-name . "samr")))
(build-system r-build-system)
(propagated-inputs
`(("r-gsa" ,r-gsa)
("r-impute" ,r-impute)
("r-matrixstats" ,r-matrixstats)
("r-openxlsx" ,r-openxlsx)
("r-shiny" ,r-shiny)
("r-shinyfiles" ,r-shinyfiles)))
(native-inputs `(("gfortran" ,gfortran)))
(home-page "https://statweb.stanford.edu/~tibs/SAM/")
(synopsis "Significance analysis of Microarrays")
(description
"This is a package for significance analysis of Microarrays for
differential expression analysis, RNAseq data and related problems.")
;; Any version of the LGPL
(license license:lgpl3+)))
(define-public r-randomforestsrc (define-public r-randomforestsrc
(package (package
(name "r-randomforestsrc") (name "r-randomforestsrc")