gnu: r-samr: Move to (gnu packages bioconductor).
* gnu/packages/cran.scm (r-samr): Move from here... * gnu/packages/bioconductor.scm (r-samr): ...to here.master
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@ -10,6 +10,7 @@
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;;; Copyright © 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
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;;; Copyright © 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
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;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
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;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
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;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de>
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;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de>
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;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
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;;;
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;;;
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;;; This file is part of GNU Guix.
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;;; This file is part of GNU Guix.
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;;;
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;;;
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@ -2809,6 +2810,36 @@ built-in). The user may export/import tracks to/from the supported browsers,
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as well as query and modify the browser state, such as the current viewport.")
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as well as query and modify the browser state, such as the current viewport.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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;; This is a CRAN package, but it depends on a Bioconductor package.
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(define-public r-samr
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(package
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(name "r-samr")
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(version "3.0")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "samr" version))
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(sha256
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(base32
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"01km0f7qgm73x19vbvsxl083hs1dq4dj8qm5h64cxbf20b08my15"))))
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(properties `((upstream-name . "samr")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-gsa" ,r-gsa)
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("r-impute" ,r-impute)
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("r-matrixstats" ,r-matrixstats)
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("r-openxlsx" ,r-openxlsx)
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("r-shiny" ,r-shiny)
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("r-shinyfiles" ,r-shinyfiles)))
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(native-inputs `(("gfortran" ,gfortran)))
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(home-page "https://statweb.stanford.edu/~tibs/SAM/")
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(synopsis "Significance analysis of Microarrays")
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(description
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"This is a package for significance analysis of Microarrays for
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differential expression analysis, RNAseq data and related problems.")
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;; Any version of the LGPL
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(license license:lgpl3+)))
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(define-public r-shortread
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(define-public r-shortread
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(package
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(package
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(name "r-shortread")
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(name "r-shortread")
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@ -33,7 +33,6 @@
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;;; Copyright © 2020 Magali Lemes <magalilemes00@gmail.com>
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;;; Copyright © 2020 Magali Lemes <magalilemes00@gmail.com>
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;;; Copyright © 2020 Simon Tournier <zimon.toutoune@gmail.com>
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;;; Copyright © 2020 Simon Tournier <zimon.toutoune@gmail.com>
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;;; Copyright © 2020 Aniket Patil <aniket112.patil@gmail.com>
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;;; Copyright © 2020 Aniket Patil <aniket112.patil@gmail.com>
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;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
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;;;
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;;;
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;;; This file is part of GNU Guix.
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;;; This file is part of GNU Guix.
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;;;
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;;;
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@ -29153,35 +29152,6 @@ indicator, a quantitative variable or a survival time.")
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;; Any version of the LGPL
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;; Any version of the LGPL
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(license license:lgpl3+)))
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(license license:lgpl3+)))
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(define-public r-samr
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(package
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(name "r-samr")
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(version "3.0")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "samr" version))
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(sha256
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(base32
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"01km0f7qgm73x19vbvsxl083hs1dq4dj8qm5h64cxbf20b08my15"))))
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(properties `((upstream-name . "samr")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-gsa" ,r-gsa)
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("r-impute" ,r-impute)
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("r-matrixstats" ,r-matrixstats)
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("r-openxlsx" ,r-openxlsx)
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("r-shiny" ,r-shiny)
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("r-shinyfiles" ,r-shinyfiles)))
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(native-inputs `(("gfortran" ,gfortran)))
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(home-page "https://statweb.stanford.edu/~tibs/SAM/")
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(synopsis "Significance analysis of Microarrays")
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(description
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"This is a package for significance analysis of Microarrays for
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differential expression analysis, RNAseq data and related problems.")
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;; Any version of the LGPL
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(license license:lgpl3+)))
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(define-public r-randomforestsrc
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(define-public r-randomforestsrc
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(package
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(package
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(name "r-randomforestsrc")
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(name "r-randomforestsrc")
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