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gnu: Add python-htsget.

* gnu/packages/bioinformatics.scm (python-htsget): New variable.
This commit is contained in:
Roel Janssen 2021-05-27 22:50:46 +02:00
parent 167fc141d4
commit a30e616ccc
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@ -846,6 +846,30 @@ input/output delimiter. When the new functionality is not used, bioawk is
intended to behave exactly the same as the original BWK awk.") intended to behave exactly the same as the original BWK awk.")
(license license:x11))) (license license:x11)))
(define-public python-htsget
(package
(name "python-htsget")
(version "0.2.5")
(source (origin
(method url-fetch)
(uri (pypi-uri "htsget" version))
(sha256
(base32
"0ic07q85vhw9djf23k57b21my7i5xp400m8gfqgr5gcryqvdr0yk"))))
(build-system python-build-system)
(native-inputs
`(("python-setuptools-scm" ,python-setuptools-scm)))
(propagated-inputs
`(("python-humanize" ,python-humanize)
("python-requests" ,python-requests)
("python-six" ,python-six)))
(home-page "https://pypi.org/project/htsget/")
(synopsis "Python API and command line interface for the GA4GH htsget API")
(description "This package is a client implementation of the GA4GH htsget
protocol. It provides a simple and reliable way to retrieve genomic data from
servers supporting the protocol.")
(license license:asl2.0)))
(define-public python-pybedtools (define-public python-pybedtools
(package (package
(name "python-pybedtools") (name "python-pybedtools")