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gnu: Add r-bgeedb.

* gnu/packages/bioconductor.scm (r-bgeedb): New variable.
master
Ricardo Wurmus 2021-09-07 12:01:03 +02:00
parent 26da032d5b
commit a59aee1330
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@ -13827,6 +13827,40 @@ intergenic sequences. These sequences are generated based on expression of
all RNA-Seq libraries of each species integrated in Bgee.")
(license license:gpl3)))
(define-public r-bgeedb
(package
(name "r-bgeedb")
(version "2.18.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "BgeeDB" version))
(sha256
(base32
"1ziq180yfpdqwhjdzkwjjhwzn3kb0gkj6q0a26c7a30mcfb50w11"))))
(properties `((upstream-name . "BgeeDB")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-curl" ,r-curl)
("r-data-table" ,r-data-table)
("r-digest" ,r-digest)
("r-dplyr" ,r-dplyr)
("r-graph" ,r-graph)
("r-r-utils" ,r-r-utils)
("r-rcurl" ,r-rcurl)
("r-rsqlite" ,r-rsqlite)
("r-tidyr" ,r-tidyr)
("r-topgo" ,r-topgo)))
(native-inputs `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/BgeeDB/BgeeDB_R")
(synopsis "Annotation and gene expression data retrieval from Bgee database")
(description
"This package provides a package for the annotation and gene expression
data download from Bgee database, and TopAnat analysis: GO-like enrichment of
anatomical terms, mapped to genes by expression patterns.")
(license license:gpl3)))
(define-public r-tximeta
(package
(name "r-tximeta")