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gnu: r-spp: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-spp): Move from here...
* gnu/packages/bioconductor.scm (r-spp): ...to here.
This commit is contained in:
Ricardo Wurmus 2021-05-31 15:53:20 +02:00
parent 1a6108ce2b
commit a6e7afd4d5
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GPG key ID: 197A5888235FACAC
2 changed files with 26 additions and 24 deletions

26
gnu/packages/bioconductor.scm
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@ -13163,6 +13163,32 @@ network models for a given data set, where these models are used to identify
statistical dependencies in messy, complex data.") statistical dependencies in messy, complex data.")
(license license:gpl2+))) (license license:gpl2+)))
;; This is a CRAN package, but it depends on r-rsamtools, which is a
;; Bioconductor package.
(define-public r-spp
(package
(name "r-spp")
(version "1.16.0")
(source (origin
(method url-fetch)
(uri (cran-uri "spp" version))
(sha256
(base32
"08zxxgyp0h6733b08jmml7k4rhfd3mi5dda3jrzid0s184y0z29w"))))
(build-system r-build-system)
(inputs
`(("zlib" ,zlib)))
(propagated-inputs
`(("r-bh" ,r-bh)
("r-catools" ,r-catools)
("r-rcpp" ,r-rcpp)
("r-rsamtools" ,r-rsamtools)))
(home-page "https://cran.r-project.org/web/packages/spp/")
(synopsis "ChIP-Seq processing pipeline")
(description "This package provides tools for analysis of ChIP-seq and
other functional sequencing data.")
(license license:gpl2)))
(define-public r-pathview (define-public r-pathview
(package (package
(name "r-pathview") (name "r-pathview")

24
gnu/packages/bioinformatics.scm
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@ -7952,30 +7952,6 @@ including VCF header and contents in RDF and JSON.")
(home-page "https://github.com/vcflib/bio-vcf") (home-page "https://github.com/vcflib/bio-vcf")
(license license:expat))) (license license:expat)))
(define-public r-spp
(package
(name "r-spp")
(version "1.16.0")
(source (origin
(method url-fetch)
(uri (cran-uri "spp" version))
(sha256
(base32
"08zxxgyp0h6733b08jmml7k4rhfd3mi5dda3jrzid0s184y0z29w"))))
(build-system r-build-system)
(inputs
`(("zlib" ,zlib)))
(propagated-inputs
`(("r-bh" ,r-bh)
("r-catools" ,r-catools)
("r-rcpp" ,r-rcpp)
("r-rsamtools" ,r-rsamtools)))
(home-page "https://cran.r-project.org/web/packages/spp/")
(synopsis "ChIP-Seq processing pipeline")
(description "This package provides tools for analysis of ChIP-seq and
other functional sequencing data.")
(license license:gpl2)))
(define-public r-phantompeakqualtools (define-public r-phantompeakqualtools
(let ((commit "8d2b2d18c686d894ef5908b37da7adf72a07ef42") (let ((commit "8d2b2d18c686d894ef5908b37da7adf72a07ef42")
(revision "1")) (revision "1"))