diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 6dced3b93e..16314b33d7 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -306,6 +306,42 @@ are included as well.") ;; Any version of the GPL. (license license:gpl3+))) +;; The package sources include multiple non-minified JavaScript files and the +;; v5.1.0 variant of d3.js. The d3.js file is not minified. +(define-public r-chromomap + (package + (name "r-chromomap") + (version "4.1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "chromoMap" version)) + (sha256 + (base32 "1067h5d6jdbm811n7ayikhqfbcqmxbz5jgp05vf1sbln7qgn9l43")))) + (properties `((upstream-name . "chromoMap"))) + (build-system r-build-system) + (propagated-inputs (list r-htmltools r-htmlwidgets)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=chromoMap") + (synopsis "Interactive genomic visualization of biological data") + (description + "This package provides interactive, configurable and graphics +visualization of the chromosome regions of any living organism allowing users +to map chromosome elements (like genes, SNPs etc.) on the chromosome plot. It +introduces a special plot viz. the \"chromosome heatmap\" that, in addition to +mapping elements, can visualize the data associated with chromosome +elements (like gene expression) in the form of heat colors. Users can +investigate the detailed information about the mappings (like gene names or +total genes mapped on a location) or can view the magnified single or double +stranded view of the chromosome at a location showing each mapped element in +sequential order. The package provide multiple features like visualizing +multiple sets, chromosome heat-maps, group annotations, adding hyperlinks, and +labelling. The plots can be saved as HTML documents that can be customized +and shared easily. In addition, you can include them in R Markdown or in R +Shiny applications.") + (license (list license:gpl3 + license:isc)))) ;for bundled d3js + (define-public r-collections (package (name "r-collections")