gnu: r-ldheatmap: Move to (gnu packages bioconductor).
This is a follow-up to commit 0c8bb20b7c
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* gnu/packages/cran.scm (r-ldheatmap): Move this from here...
* gnu/packages/bioconductor.scm (r-ldheatmap): ...to here.
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@ -9618,6 +9618,34 @@ handling of existing population-level data for the purpose of flexibly
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defining LD blocks.")
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(license license:artistic2.0)))
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;; This is a CRAN package, but it depends on r-snpstats, which is a
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;; Bioconductor package.
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(define-public r-ldheatmap
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(package
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(name "r-ldheatmap")
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(version "1.0-4")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "LDheatmap" version))
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(sha256
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(base32
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"1jp578cf29qcgx95w10lpymlwx2pgjsf0nypwkl9b8g635gkisq7"))))
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(properties `((upstream-name . "LDheatmap")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-genetics" ,r-genetics)
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("r-rcpp" ,r-rcpp)
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("r-snpstats" ,r-snpstats)))
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(home-page "https://stat.sfu.ca/statgen/research/ldheatmap.html")
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(synopsis "Graphical display of pairwise linkage disequilibria between SNPs")
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(description
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"This package provides tools to produce a graphical display, as a heat
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map, of measures of pairwise linkage disequilibria between SNPs. Users may
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optionally include the physical locations or genetic map distances of each SNP
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on the plot.")
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(license license:gpl3)))
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(define-public r-pathview
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(package
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(name "r-pathview")
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@ -14718,34 +14718,6 @@ effects. It is applicable to backcrosses, doubled haploids, recombinant
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inbred lines, F2 intercrosses, and association mapping populations.")
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(license license:gpl2)))
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(define-public r-ldheatmap
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(package
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(name "r-ldheatmap")
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(version "1.0-4")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "LDheatmap" version))
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(sha256
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(base32
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"1jp578cf29qcgx95w10lpymlwx2pgjsf0nypwkl9b8g635gkisq7"))))
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(properties `((upstream-name . "LDheatmap")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-genetics" ,r-genetics)
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("r-rcpp" ,r-rcpp)
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("r-snpstats" ,(module-ref
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(resolve-interface '(gnu packages bioconductor))
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'r-snpstats))))
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(home-page "https://stat.sfu.ca/statgen/research/ldheatmap.html")
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(synopsis "Graphical display of pairwise linkage disequilibria between SNPs")
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(description
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"This package provides tools to produce a graphical display, as a heat
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map, of measures of pairwise linkage disequilibria between SNPs. Users may
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optionally include the physical locations or genetic map distances of each SNP
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on the plot.")
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(license license:gpl3)))
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(define-public r-hwde
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(package
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(name "r-hwde")
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