gnu: r-ldheatmap: Move to (gnu packages bioconductor).
This is a follow-up to commit 0c8bb20b7c
.
* gnu/packages/cran.scm (r-ldheatmap): Move this from here...
* gnu/packages/bioconductor.scm (r-ldheatmap): ...to here.
This commit is contained in:
parent
da2877237e
commit
a7d6e1b6a1
2 changed files with 28 additions and 28 deletions
|
@ -9618,6 +9618,34 @@ handling of existing population-level data for the purpose of flexibly
|
||||||
defining LD blocks.")
|
defining LD blocks.")
|
||||||
(license license:artistic2.0)))
|
(license license:artistic2.0)))
|
||||||
|
|
||||||
|
;; This is a CRAN package, but it depends on r-snpstats, which is a
|
||||||
|
;; Bioconductor package.
|
||||||
|
(define-public r-ldheatmap
|
||||||
|
(package
|
||||||
|
(name "r-ldheatmap")
|
||||||
|
(version "1.0-4")
|
||||||
|
(source
|
||||||
|
(origin
|
||||||
|
(method url-fetch)
|
||||||
|
(uri (cran-uri "LDheatmap" version))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"1jp578cf29qcgx95w10lpymlwx2pgjsf0nypwkl9b8g635gkisq7"))))
|
||||||
|
(properties `((upstream-name . "LDheatmap")))
|
||||||
|
(build-system r-build-system)
|
||||||
|
(propagated-inputs
|
||||||
|
`(("r-genetics" ,r-genetics)
|
||||||
|
("r-rcpp" ,r-rcpp)
|
||||||
|
("r-snpstats" ,r-snpstats)))
|
||||||
|
(home-page "https://stat.sfu.ca/statgen/research/ldheatmap.html")
|
||||||
|
(synopsis "Graphical display of pairwise linkage disequilibria between SNPs")
|
||||||
|
(description
|
||||||
|
"This package provides tools to produce a graphical display, as a heat
|
||||||
|
map, of measures of pairwise linkage disequilibria between SNPs. Users may
|
||||||
|
optionally include the physical locations or genetic map distances of each SNP
|
||||||
|
on the plot.")
|
||||||
|
(license license:gpl3)))
|
||||||
|
|
||||||
(define-public r-pathview
|
(define-public r-pathview
|
||||||
(package
|
(package
|
||||||
(name "r-pathview")
|
(name "r-pathview")
|
||||||
|
|
|
@ -14718,34 +14718,6 @@ effects. It is applicable to backcrosses, doubled haploids, recombinant
|
||||||
inbred lines, F2 intercrosses, and association mapping populations.")
|
inbred lines, F2 intercrosses, and association mapping populations.")
|
||||||
(license license:gpl2)))
|
(license license:gpl2)))
|
||||||
|
|
||||||
(define-public r-ldheatmap
|
|
||||||
(package
|
|
||||||
(name "r-ldheatmap")
|
|
||||||
(version "1.0-4")
|
|
||||||
(source
|
|
||||||
(origin
|
|
||||||
(method url-fetch)
|
|
||||||
(uri (cran-uri "LDheatmap" version))
|
|
||||||
(sha256
|
|
||||||
(base32
|
|
||||||
"1jp578cf29qcgx95w10lpymlwx2pgjsf0nypwkl9b8g635gkisq7"))))
|
|
||||||
(properties `((upstream-name . "LDheatmap")))
|
|
||||||
(build-system r-build-system)
|
|
||||||
(propagated-inputs
|
|
||||||
`(("r-genetics" ,r-genetics)
|
|
||||||
("r-rcpp" ,r-rcpp)
|
|
||||||
("r-snpstats" ,(module-ref
|
|
||||||
(resolve-interface '(gnu packages bioconductor))
|
|
||||||
'r-snpstats))))
|
|
||||||
(home-page "https://stat.sfu.ca/statgen/research/ldheatmap.html")
|
|
||||||
(synopsis "Graphical display of pairwise linkage disequilibria between SNPs")
|
|
||||||
(description
|
|
||||||
"This package provides tools to produce a graphical display, as a heat
|
|
||||||
map, of measures of pairwise linkage disequilibria between SNPs. Users may
|
|
||||||
optionally include the physical locations or genetic map distances of each SNP
|
|
||||||
on the plot.")
|
|
||||||
(license license:gpl3)))
|
|
||||||
|
|
||||||
(define-public r-hwde
|
(define-public r-hwde
|
||||||
(package
|
(package
|
||||||
(name "r-hwde")
|
(name "r-hwde")
|
||||||
|
|
Reference in a new issue