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gnu: r-ldheatmap: Move to (gnu packages bioconductor).

This is a follow-up to commit 0c8bb20b7c.

* gnu/packages/cran.scm (r-ldheatmap): Move this from here...
* gnu/packages/bioconductor.scm (r-ldheatmap): ...to here.
master
Ricardo Wurmus 2020-12-29 22:16:15 +01:00
parent da2877237e
commit a7d6e1b6a1
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GPG Key ID: 197A5888235FACAC
2 changed files with 28 additions and 28 deletions

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@ -9618,6 +9618,34 @@ handling of existing population-level data for the purpose of flexibly
defining LD blocks.")
(license license:artistic2.0)))
;; This is a CRAN package, but it depends on r-snpstats, which is a
;; Bioconductor package.
(define-public r-ldheatmap
(package
(name "r-ldheatmap")
(version "1.0-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "LDheatmap" version))
(sha256
(base32
"1jp578cf29qcgx95w10lpymlwx2pgjsf0nypwkl9b8g635gkisq7"))))
(properties `((upstream-name . "LDheatmap")))
(build-system r-build-system)
(propagated-inputs
`(("r-genetics" ,r-genetics)
("r-rcpp" ,r-rcpp)
("r-snpstats" ,r-snpstats)))
(home-page "https://stat.sfu.ca/statgen/research/ldheatmap.html")
(synopsis "Graphical display of pairwise linkage disequilibria between SNPs")
(description
"This package provides tools to produce a graphical display, as a heat
map, of measures of pairwise linkage disequilibria between SNPs. Users may
optionally include the physical locations or genetic map distances of each SNP
on the plot.")
(license license:gpl3)))
(define-public r-pathview
(package
(name "r-pathview")

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@ -14718,34 +14718,6 @@ effects. It is applicable to backcrosses, doubled haploids, recombinant
inbred lines, F2 intercrosses, and association mapping populations.")
(license license:gpl2)))
(define-public r-ldheatmap
(package
(name "r-ldheatmap")
(version "1.0-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "LDheatmap" version))
(sha256
(base32
"1jp578cf29qcgx95w10lpymlwx2pgjsf0nypwkl9b8g635gkisq7"))))
(properties `((upstream-name . "LDheatmap")))
(build-system r-build-system)
(propagated-inputs
`(("r-genetics" ,r-genetics)
("r-rcpp" ,r-rcpp)
("r-snpstats" ,(module-ref
(resolve-interface '(gnu packages bioconductor))
'r-snpstats))))
(home-page "https://stat.sfu.ca/statgen/research/ldheatmap.html")
(synopsis "Graphical display of pairwise linkage disequilibria between SNPs")
(description
"This package provides tools to produce a graphical display, as a heat
map, of measures of pairwise linkage disequilibria between SNPs. Users may
optionally include the physical locations or genetic map distances of each SNP
on the plot.")
(license license:gpl3)))
(define-public r-hwde
(package
(name "r-hwde")