gnu: Add r-jetset.
* gnu/packages/bioconductor.scm (r-jetset): New variable.
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@ -1963,6 +1963,33 @@ the weighted combination of published signatures that, when summed, most
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closely reconstructs the mutational profile.")
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closely reconstructs the mutational profile.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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;; This is a CRAN package, but it depends on Bioconductor packages.
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(define-public r-jetset
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(package
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(name "r-jetset")
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(version "3.4.0")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "jetset" version))
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(sha256
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(base32 "0c99h5npsv2gf5d59s4qhkaqmjhbwa3prcykk24wzhnpfq6y6xhp"))))
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(properties `((upstream-name . "jetset")))
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(build-system r-build-system)
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(propagated-inputs (list r-annotationdbi r-org-hs-eg-db))
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(home-page "http://www.cbs.dtu.dk/biotools/jetset/")
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(synopsis "One-to-one gene-probeset mapping for Affymetrix human microarrays")
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(description
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"This package provides a one-to-one mapping from gene to \"best\" probe
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set for four Affymetrix human gene expression microarrays: hgu95av2, hgu133a,
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hgu133plus2, and u133x3p. On Affymetrix gene expression microarrays, a single
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gene may be measured by multiple probe sets. This can present a mild
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conundrum when attempting to evaluate a gene \"signature\" that is defined by
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gene names rather than by specific probe sets. This package also includes the
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pre-calculated probe set quality scores that were used to define the
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mapping.")
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(license license:artistic2.0)))
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;; This is a CRAN package, but it depends on Bioconductor packages.
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;; This is a CRAN package, but it depends on Bioconductor packages.
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(define-public r-nmf
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(define-public r-nmf
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(package
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(package
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