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gnu: gdcm: Add documentation. 

* gnu/packages/bioinformatics.scm (gdcm)[outputs]: New field.
[arguments]: Add #:phases.  Augment #:configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Tor-björn Claesson 2023-01-14 19:03:39 +02:00 committed by Ludovic Courtès
parent 56551281a5
commit a84ceaa8b2
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1 changed files with 15 additions and 1 deletions
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@ -18084,8 +18084,16 @@ module capable of computing base-level alignments for very large sequences.")
(base32
"1rf0p7dnakjry0fa6ax1h762bn0l5n6ibfdxn077mjvwgpqan51l"))))
(build-system cmake-build-system)
(outputs '("out" "doc"))
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(add-before 'build 'set-HOME
;; The build spams ‘Fontconfig error: No writable cache
;; directories’ in a seemingly endless loop otherwise.
(lambda _
(setenv "HOME" "/tmp"))))
#:configure-flags
#~(list "-DGDCM_BUILD_TESTING=true"
(string-append "-DCMAKE_CTEST_ARGUMENTS=-E;"
@ -18096,7 +18104,13 @@ module capable of computing base-level alignments for very large sequences.")
"|TestAnonymizer4"
"|TestPrinter1"
"|TestEcho"
"|TestFind'"))))
"|TestFind'")
"-DGDCM_DOCUMENTATION:BOOL=ON"
"-DGDCM_PDF_DOCUMENTATION:BOOL=OFF"
(string-append "-DGDCM_INSTALL_DOC_DIR="
#$output:doc "/share/doc/" #$name)
"-DGDCM_BUILD_DOCBOOK_MANPAGES:BOOL=OFF"))) ; TODO: need ‘xsl-ns’
(native-inputs (list doxygen graphviz))
(home-page "https://gdcm.sourceforge.net/wiki/index.php/Main_Page")
(synopsis "Grassroots DICOM library")
(description