gnu: Add gdc-client.
* gnu/packages/bioinformatics.scm (gdc-client): New variable.master
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@ -7841,6 +7841,46 @@ includes software to
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")
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(license license:cc0))))
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(define-public gdc-client
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(package
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(name "gdc-client")
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(version "1.6.0")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/NCI-GDC/gdc-client.git")
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(commit version)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0cagawlzjwj3wam10lv64xgbfx4zcnzxi5sjpsdhq7rn4z24mzc2"))))
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(build-system python-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'relax-requirements
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(lambda _
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(substitute* "requirements.txt"
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(("==") ">=")))))))
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(inputs
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`(("python-cryptography" ,python-cryptography)
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("python-intervaltree" ,python-intervaltree)
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("python-jsonschema" ,python-jsonschema)
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("python-lxml" ,python-lxml)
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("python-ndg-httpsclient" ,python-ndg-httpsclient)
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("python-progressbar2" ,python-progressbar2)
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("python-pyasn1" ,python-pyasn1)
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("python-pyopenssl" ,python-pyopenssl)
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("python-pyyaml" ,python-pyyaml)
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("python-requests" ,python-requests)
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("python-termcolor" ,python-termcolor)))
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(home-page "https://gdc.nci.nih.gov/access-data/gdc-data-transfer-tool")
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(synopsis "GDC data transfer tool")
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(description "The gdc-client provides several convenience functions over
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the GDC API which provides general download/upload via HTTPS.")
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(license license:asl2.0)))
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(define-public vsearch
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(package
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(name "vsearch")
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