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gnu: Add r-dss.

* gnu/packages/bioconductor.scm (r-dss): New variable.
master
Ricardo Wurmus 2023-03-30 14:15:59 +02:00
parent 6d1cc311e5
commit a969d91ca5
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@ -4727,6 +4727,32 @@ makes available functions for visualization and exploration of the data and
results.") results.")
(license license:gpl3+))) (license license:gpl3+)))
(define-public r-dss
(package
(name "r-dss")
(version "2.46.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "DSS" version))
(sha256
(base32
"1qm0pq6495fn2zrbddaadb1w01ry76rg8mmbmxf3zws9pww48jgf"))))
(properties `((upstream-name . "DSS")))
(build-system r-build-system)
(propagated-inputs (list r-biobase r-biocparallel r-bsseq))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/DSS")
(synopsis "Dispersion shrinkage for sequencing data")
(description
"DSS is an R library performing differential analysis for count-based
sequencing data. It detects @dfn{differentially expressed genes} (DEGs) from
RNA-seq, and differentially methylated loci or regions (DML/DMRs) from
@dfn{bisulfite sequencing} (BS-seq). The core of DSS is a dispersion
shrinkage method for estimating the dispersion parameter from Gamma-Poisson or
Beta-Binomial distributions.")
;; Any version of the GPL
(license (list license:gpl2+ license:gpl3+))))
(define-public r-bluster (define-public r-bluster
(package (package
(name "r-bluster") (name "r-bluster")