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gnu: tabixpp: Use #:make-flags. 

* gnu/packages/bioinformatics.scm (tabixpp)[arguments]: Do not override the
build phase. Move the required make arguments to #:make-flags. Add
build-libraries phase.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
master
Arun Isaac 2022-04-26 18:16:32 +05:30 committed by Efraim Flashner
parent ff1fd3b012
commit a990547952
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1 changed files with 8 additions and 8 deletions
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gnu/packages/bioinformatics.scm
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@ -14298,18 +14298,18 @@ mutations from scRNA-Seq data.")
(inputs
(list htslib zlib))
(arguments
(list #:tests? #f ; There are no tests to run.
(list #:make-flags #~(list "HTS_HEADERS="
(string-append "HTS_LIB="
(search-input-file %build-inputs
"/lib/libhts.a"))
"INCLUDES=")
#:tests? #f ; There are no tests to run.
#:phases
#~(modify-phases %standard-phases
(delete 'configure) ; There is no configure phase.
;; The build phase needs overriding the location of htslib.
(replace 'build
;; Build shared and static libraries.
(add-after 'build 'build-libraries
(lambda* (#:key inputs #:allow-other-keys)
(invoke "make"
(string-append "HTS_LIB=" (search-input-file inputs "/lib/libhts.a"))
(string-append "INCLUDES= -I" (search-input-directory inputs "/include/htslib"))
"HTS_HEADERS=" ; No need to check for headers here.
(string-append "LIBPATH=-L. -L" (search-input-directory inputs "/include")))
(invoke "g++" "-shared" "-o" "libtabixpp.so" "tabix.o" "-lhts")
(invoke "ar" "rcs" "libtabixpp.a" "tabix.o")))
(replace 'install