gnu: Add r-xina.
* gnu/packages/bioconductor.scm (r-xina): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>master
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@ -4695,6 +4695,42 @@ their variance is independent of the mean, and they are usually more sensitive
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and specific in detecting differential transcription.")
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and specific in detecting differential transcription.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-xina
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(package
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(name "r-xina")
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(version "1.12.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "XINA" version))
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(sha256
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(base32 "14j1rn3p7i0rlqkbbg0a6pyhb97ifzvsbw6vfxw9pna7zv7rbhsp"))))
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(properties `((upstream-name . "XINA")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-alluvial" ,r-alluvial)
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("r-ggplot2" ,r-ggplot2)
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("r-gridextra" ,r-gridextra)
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("r-igraph" ,r-igraph)
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("r-mclust" ,r-mclust)
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("r-plyr" ,r-plyr)
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("r-stringdb" ,r-stringdb)))
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(native-inputs `(("r-knitr" ,r-knitr)))
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(home-page "https://git.bioconductor.org/packages/XINA")
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(synopsis "Identifying proteins that exhibit similar patterns")
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(description
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"The aim of @code{XINA} is to determine which proteins exhibit similar
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patterns within and across experimental conditions, since proteins with
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co-abundance patterns may have common molecular functions. @code{XINA} imports
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multiple datasets, tags dataset in silico, and combines the data for subsequent
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subgrouping into multiple clusters. The result is a single output depicting
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the variation across all conditions. @code{XINA} not only extracts
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coabundance profiles within and across experiments, but also incorporates
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protein-protein interaction databases and integrative resources such as
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@dfn{Kyoto encyclopedia of genes and genomes} (KEGG) to infer interactors and
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molecular functions, respectively, and produces intuitive graphical outputs.")
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(license license:gpl3)))
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(define-public r-xvector
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(define-public r-xvector
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(package
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(package
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(name "r-xvector")
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(name "r-xvector")
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