From ab4a91b25280f4e57f007e5b3cea72a30091f647 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 5 Jun 2021 01:47:39 +0200 Subject: [PATCH] gnu: Add r-treeio. * gnu/packages/bioconductor.scm (r-treeio): New variable. --- gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0302c74ca1..10463b29c2 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5675,6 +5675,38 @@ This permits greater efficiency in common operations, most notably matrix multiplication.") (license license:gpl3))) +(define-public r-treeio + (package + (name "r-treeio") + (version "1.16.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "treeio" version)) + (sha256 + (base32 + "0ypl4h80m08sf7r4zfvqgvpsz46x15wvcl1idq5pd813bp1w2sws")))) + (properties `((upstream-name . "treeio"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ape" ,r-ape) + ("r-dplyr" ,r-dplyr) + ("r-jsonlite" ,r-jsonlite) + ("r-magrittr" ,r-magrittr) + ("r-rlang" ,r-rlang) + ("r-tibble" ,r-tibble) + ("r-tidytree" ,r-tidytree))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/YuLab-SMU/treeio") + (synopsis "Base classes and functions for Phylogenetic tree input and output") + (description + "This is an R package to make it easier to import and store phylogenetic +trees with associated data; and to link external data from different sources +to phylogeny. It also supports exporting phylogenetic trees with +heterogeneous associated data to a single tree file and can be served as a +platform for merging tree with associated data and converting file formats.") + (license license:artistic2.0))) + (define-public r-biocsingular (package (name "r-biocsingular")