gnu: Add r-fcscan.
* gnu/packages/bioconductor.scm (r-fcscan): New variable.
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@ -7331,6 +7331,37 @@ specified group of genes for a pathway has a coordinated association with a
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phenotype of interest.")
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phenotype of interest.")
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(license license:gpl2)))
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(license license:gpl2)))
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(define-public r-fcscan
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(package
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(name "r-fcscan")
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(version "1.6.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "fcScan" version))
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(sha256
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(base32 "10fcz741dr3wbb9f63qywlrays4cnvfnsm6yw4bmkrwk6ccijg8h"))))
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(properties `((upstream-name . "fcScan")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-plyr" ,r-plyr)
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("r-rtracklayer" ,r-rtracklayer)
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("r-summarizedexperiment" ,r-summarizedexperiment)
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("r-variantannotation" ,r-variantannotation)))
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(native-inputs `(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/fcScan")
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(synopsis "Detect clusters of coordinates with user defined options")
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(description
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"This package is used to detect combination of genomic coordinates
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falling within a user defined window size along with user defined overlap
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between identified neighboring clusters. It can be used for genomic data
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where the clusters are built on a specific chromosome or specific strand.
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Clustering can be performed with a \"greedy\" option allowing thus the
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presence of additional sites within the allowed window size.")
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(license license:artistic2.0)))
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(define-public r-fgsea
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(define-public r-fgsea
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(package
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(package
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(name "r-fgsea")
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(name "r-fgsea")
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