gnu: Add python-drep.
* gnu/packages/bioinformatics.scm (python-drep): New variable.master
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@ -13147,6 +13147,36 @@ create connections between analogous cells in different batches without
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altering the counts or PCA space.")
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altering the counts or PCA space.")
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(license license:expat)))
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(license license:expat)))
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(define-public python-drep
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(package
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(name "python-drep")
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(version "3.2.0")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "drep" version))
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(sha256
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(base32
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"08vk0x6v5c5n7afgd5pcjhsvb424absypxy22hw1cm1n9kirbi77"))))
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(build-system python-build-system)
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(propagated-inputs
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`(("python-biopython" ,python-biopython)
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("python-matplotlib" ,python-matplotlib)
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("python-numpy" ,python-numpy)
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("python-pandas" ,python-pandas)
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("python-pytest" ,python-pytest)
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("python-scikit-learn" ,python-scikit-learn)
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("python-seaborn" ,python-seaborn)
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("python-tqdm" ,python-tqdm)))
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(home-page "https://github.com/MrOlm/drep")
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(synopsis "De-replication of microbial genomes assembled from multiple samples")
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(description
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"dRep is a Python program for rapidly comparing large numbers of genomes.
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dRep can also \"de-replicate\" a genome set by identifying groups of highly
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similar genomes and choosing the best representative genome for each genome
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set.")
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(license license:expat)))
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(define-public gffcompare
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(define-public gffcompare
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(let ((commit "be56ef4349ea3966c12c6397f85e49e047361c41")
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(let ((commit "be56ef4349ea3966c12c6397f85e49e047361c41")
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(revision "1"))
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(revision "1"))
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