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gnu: Add r-all.

* gnu/packages/bioconductor.scm (r-all): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
master
zimoun 2019-07-24 20:21:56 +02:00 committed by Ricardo Wurmus
parent 6deb08a359
commit ad8f46c69e
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@ -865,6 +865,34 @@ which were then sequenced to a depth of ~4 million reads per library,
resulting in a complete gene expression profile for each cell.")
(license license:artistic2.0)))
(define-public r-all
(package
(name "r-all")
(version "1.26.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/experiment/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/experiment/src/contrib/"
"ALL_" version ".tar.gz"))
(sha256
(base32
"1z7kpjw4ndj6fkxwvhqf3gawhrn26ksrlns7j2c78qzxqmjndik9"))))
(properties `((upstream-name . "ALL")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)))
(home-page "https://bioconductor.org/packages/ALL")
(synopsis "Acute Lymphoblastic Leukemia data from the Ritz laboratory")
(description
"The data consist of microarrays from 128 different individuals with
@dfn{acute lymphoblastic leukemia} (ALL). A number of additional covariates
are available. The data have been normalized (using rma) and it is the
jointly normalized data that are available here. The data are presented in
the form of an @code{exprSet} object.")
(license license:artistic2.0)))
;;; Packages