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gnu: pigx-chipseq: Fix build.

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* gnu/packages/bioinformatics.scm (pigx-chipseq)[arguments]: Patch build
system.
This commit is contained in:
Ricardo Wurmus 2022-05-29 00:18:48 +02:00
parent 66bfe55848
commit add551f651
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1 changed files with 9 additions and 0 deletions
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gnu/packages/bioinformatics.scm
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@ -11094,6 +11094,15 @@ expression report comparing samples in an easily configurable manner.")
(modify-phases %standard-phases (modify-phases %standard-phases
(add-before 'bootstrap 'autoreconf (add-before 'bootstrap 'autoreconf
(lambda _ (lambda _
;; This was fixed in commit
;; 0b1c9f7f2e4d0ff601f1de95ab8b2953f4d5dbc7, but there is no
;; release with this fix.
(call-with-output-file "VERSION"
(lambda (port) (display ,version port)))
;; See https://github.com/BIMSBbioinfo/pigx_chipseq/issues/176
(substitute* "m4/ax_r_package.m4"
(("if\\(is.na\\(packageDescription\\(\"PKG\"\\)\\)\\)")
"if(system.file(package=\"PKG\") == \"\")"))
(invoke "autoreconf" "-vif"))) (invoke "autoreconf" "-vif")))
(add-before 'configure 'set-PYTHONPATH (add-before 'configure 'set-PYTHONPATH
(lambda _ (lambda _